ggKbase home page

SCNpilot_cont_500_bf_scaffold_348_10

Organism: SCNpilot_BF_INOC_Rhodanobacter_69_30

near complete RP 48 / 55 MC: 2 BSCG 47 / 51 MC: 3 ASCG 12 / 38
Location: comp(16132..17004)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKN4_BEII9 similarity UNIREF
DB: UNIREF100
  • Identity: 76.3
  • Coverage: 173.0
  • Bit_score: 264
  • Evalue 1.00e-67
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 76.3
  • Coverage: 173.0
  • Bit_score: 264
  • Evalue 3.30e-68
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB95073.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.3
  • Coverage: 173.0
  • Bit_score: 264
  • Evalue 1.50e-67

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Beijerinckia indica → Beijerinckia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 873
ATGATCGACACGGCTCGCGGCTCCACCCGCAATCTTCCATACCCCGCACGGAGGGTCCGCGCTGCCAGCCTTGCCGAGCAGCAGGCGGCCTTCGCCATTGCGCTCCTTGATGCGCAGCAGCCGCTCCCCACCGGCCTGCAGGGTCCCGACGGGCAGCCGAGCGCCAGGCGCTTTGCCGTTTATCGCAACAACGTCGTCGTCGGCCTGGTCGAAACCCTGAAAGCCGCGTATCCGGTGATTCTTCGCCTCGTCGGCGAGGAGTTCTTCGTTGCCATGGCGCGCATGTACGTGAGGGCGGAACCGCCGGCCTCGCCGATCATGCTCGATTACGGAGCCGGCTTCCCCCGGTTCATCGGGCAGTTCGAGCCGGCCACCGCCCTGCCCTACCTGCGCCTGCTCCGGGAAATCACGCCCTACCTTCGATCGCTGGTCAGGCGGTGGATCAAGGATGCGTGGGACATCGAAGACGCCGTGCAGGACATTCTGCTGACGCTGCATTCGATCCGGCATACCTACGATCCCTCGCGGCCATTCGGGCCCTGGCTGGTCGGCATCGCCAATCGCCGGGCCATCGACAAGCTGCGTCGCCGCGGCAGGCAGGCGCTGCGCGAAACCCCGCTCACCGCCGAGCACGAGGCAACCATCGCGGCAGCCGGCAACAGCGACGATGCGCTGGAAAAACAGCACCTGGAAAAGGTCATCAATGACCTTCCGCCGATCCAGCGGACGGCGGTCGATCTCCTCAAGCTGAAGGAAATGTCGTTGAAGGAAGCCTCCGACGCTACCGGGCTCTCCGTGGCGTCGCTCAAGATGGCGACCCATCGGGCGCTTCGGAACTTGCGCAACCTGCTCTCCGACCGGAGGGACCCGTGA
PROTEIN sequence
Length: 291
MIDTARGSTRNLPYPARRVRAASLAEQQAAFAIALLDAQQPLPTGLQGPDGQPSARRFAVYRNNVVVGLVETLKAAYPVILRLVGEEFFVAMARMYVRAEPPASPIMLDYGAGFPRFIGQFEPATALPYLRLLREITPYLRSLVRRWIKDAWDIEDAVQDILLTLHSIRHTYDPSRPFGPWLVGIANRRAIDKLRRRGRQALRETPLTAEHEATIAAAGNSDDALEKQHLEKVINDLPPIQRTAVDLLKLKEMSLKEASDATGLSVASLKMATHRALRNLRNLLSDRRDP*