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SCNpilot_cont_500_bf_scaffold_4419

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4419_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1610
DNA (1608bp) protein (536aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
DNA topoisomerase 1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKM0_NITHX
SCNpilot_cont_500_bf_scaffold_4419_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1802..4156
DNA (2355bp) protein (785aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
ribonuclease R (EC:3.1.13.1); K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKL9_NITHX
SCNpilot_cont_500_bf_scaffold_4419_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4153..4596
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WWV8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35532.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4419_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4637..5362
DNA (726bp) protein (242aa)
NUDIX hydrolase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKL7_NITHX
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ABE63230.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_5
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5567..5791
DNA (225bp) protein (75aa)
50S ribosomal protein L33 n=3 Tax=Bradyrhizobiaceae RepID=RL33_NITHX
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
Putative 50S ribosomal subunit protein L33 (Modular protein) {ECO:0000313|EMBL:CCD85898.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
SCNpilot_cont_500_bf_scaffold_4419_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6023..6688
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHN8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09293.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_cont_500_bf_scaffold_4419_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6766..8139)
DNA (1374bp) protein (458aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKL5_NITHX
pleD; response regulator PleD; K02488 two-component system, cell cycle response regulator
Response regulator receiver modulated diguanylate cyclase {ECO:0000313|EMBL:ABE63232.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8150..8515)
DNA (366bp) protein (122aa)
Response regulator receiver domain protein (CheY-like) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKL4_NITHX
response regulator receiver domain-containing protein; K11443 two-component system, cell cycle response regulator DivK
Response regulator receiver domain protein (CheY-like) {ECO:0000313|EMBL:ABE63233.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8748..9047
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKL3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63234.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9044..10333
DNA (1290bp) protein (430aa)
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
DNA polymerase IV n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKL2_NITHX
SCNpilot_cont_500_bf_scaffold_4419_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10358..11257)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKL1_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63236.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11486..11953
DNA (468bp) protein (156aa)
Endoribonuclease L-PSP n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK9_NITHX
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABE63238.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11959..12711
DNA (753bp) protein (251aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK8_NITHX
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ABE63239.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12923..14092
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK7_NITHX rbh
hypothetical protein; K09919 hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63240.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14142..14453)
DNA (312bp) protein (104aa)
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:ABE63248.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ABE63248.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
O-acetylhomoserine sulfhydrolase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ9_NITHX
SCNpilot_cont_500_bf_scaffold_4419_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15414..15998)
DNA (585bp) protein (195aa)
CoA-binding protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK0_NITHX rbh
CoA-binding protein; K06929 rbh
CoA-binding protein {ECO:0000313|EMBL:ABE63247.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_17
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16161..16694)
DNA (534bp) protein (178aa)
enoyl-CoA hydratase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037C6CCD
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJC35962.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
fadB; enoyl-CoA hydratase
SCNpilot_cont_500_bf_scaffold_4419_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17095..17382
DNA (288bp) protein (96aa)
Phenylacetic acid degradation-related protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK1_NITHX
phenylacetic acid degradation-related protein
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:ABE63246.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_19
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17536..18000
DNA (465bp) protein (155aa)
50S ribosomal protein L13 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYZ8_9BRAD rbh
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 rbh
SCNpilot_cont_500_bf_scaffold_4419_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18003..18479
DNA (477bp) protein (159aa)
30S ribosomal protein S9 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RS9_NITHX rbh
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 rbh
30S ribosomal protein S9 {ECO:0000255|HAMAP-Rule:MF_00532}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18645..19586
DNA (942bp) protein (314aa)
Lytic transglycosylase, catalytic n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK4_NITHX rbh
lytic transglycosylase, catalytic rbh
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:ABE63243.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19702..20193
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKK5_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63242.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4419_23
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20311..21564)
DNA (1254bp) protein (418aa)
Major facilitator superfamily protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYZ1_9BRAD rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EAQ34794.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
major facilitator transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter rbh
SCNpilot_cont_500_bf_scaffold_4419_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21881..22300)
DNA (420bp) protein (140aa)
Heme A synthase {ECO:0000255|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000255|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000255|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000255|HAMAP-Rule:MF_01665}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Heme A synthase n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=CTAA_NITHX
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
Displaying 24 items

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