ggKbase home page

SCNpilot_cont_500_bf_scaffold_874

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_874_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1462)
DNA (1461bp) protein (487aa)
Membrane protein insertase YidC n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=YIDC_NITHX
inner membrane protein translocase component YidC; K03217 preprotein translocase subunit YidC
Membrane protein insertase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Foldase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000255|HAMAP-Rule:MF_01810}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_874_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1536..1871)
DNA (336bp) protein (112aa)
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229)
Ribonuclease P protein component n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH67_NITHX
SCNpilot_cont_500_bf_scaffold_874_3
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1895..2146)
DNA (252bp) protein (84aa)
Ribosomal protein L34 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN17_NITWN
Ribosomal protein L34 {ECO:0000256|RuleBase:RU000566}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
50S ribosomal subunit protein L34
SCNpilot_cont_500_bf_scaffold_874_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2351..3826
DNA (1476bp) protein (492aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
Signal transduction histidine kinase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1G2_9BRAD
histidine kinase
SCNpilot_cont_500_bf_scaffold_874_trna_1
unknown

Not on your lists

4068..4141
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_874_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4278..4649)
DNA (372bp) protein (124aa)
Resolvase domain n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP48_RHOPX
resolvase domain-containing protein
Resolvase domain {ECO:0000313|EMBL:ADU42494.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_500_bf_scaffold_874_6
unknown

Not on your lists

4909..5124
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_874_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5293..5652)
DNA (360bp) protein (120aa)
PRC-barrel n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFY4_NITHX
PRC-barrel
PRC-barrel {ECO:0000313|EMBL:ABE64863.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_874_8
unknown

Not on your lists

6088..6234
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_874_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6393..7349)
DNA (957bp) protein (319aa)
Catalase {ECO:0000313|EMBL:BAK65376.1}; EC=1.11.1.6 {ECO:0000313|EMBL:BAK65376.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Catalase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMC1_9SPHN
catalase; K07217 Mn-containing catalase
SCNpilot_cont_500_bf_scaffold_874_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8120..8611
DNA (492bp) protein (164aa)
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG95_NITHX rbh
pyridoxamine 5'-phosphate oxidase-related, FMN-binding rbh
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding {ECO:0000313|EMBL:ABE64752.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_874_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8726..9781
DNA (1056bp) protein (352aa)
Chalcone and stilbene synthases-like n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG96_NITHX rbh
chalcone and stilbene synthases-like rbh
Chalcone and stilbene synthases-like {ECO:0000313|EMBL:ABE64751.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_874_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9778..10272
DNA (495bp) protein (165aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG97_NITHX
isoprenylcysteine carboxyl methyltransferase
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:ABE64750.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_874_13
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..10853)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AS62_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN48853.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
SCNpilot_cont_500_bf_scaffold_874_14
unknown

Not on your lists

11076..11453
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_874_15
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11685..12971
DNA (1287bp) protein (429aa)
Citrate carrier protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M1C4_METRJ
Malate permease {ECO:0000313|EMBL:KJC40169.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
citrate carrier protein
SCNpilot_cont_500_bf_scaffold_874_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13014..13943
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NVQ7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33231.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
lysR; LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_874_17
unknown

Not on your lists

14046..14228
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_874_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14433..15185
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHG0_MESAW
Uncharacterized protein {ECO:0000313|EMBL:KIZ40259.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_874_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15190..16953
DNA (1764bp) protein (588aa)
GMC family oxidoreductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003455AB4 rbh
GMC family oxidoreductase {ECO:0000313|EMBL:KIZ40258.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
gluconate 2-dehydrogenase flavoprotein precursor
SCNpilot_cont_500_bf_scaffold_874_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16958..18187
DNA (1230bp) protein (410aa)
alcohol dehydrogenase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345DFA9
Alcohol dehydrogenase {ECO:0000313|EMBL:KIZ40257.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Gluconate 2-dehydrogenase subunit rbh
SCNpilot_cont_500_bf_scaffold_874_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18211..18510)
DNA (300bp) protein (100aa)
UPI0003D68D0F related cluster n=1 Tax=unknown RepID=UPI0003D68D0F
Uncharacterized protein {ECO:0000313|EMBL:KGM34409.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
caa(3)-type oxidase, subunit IV
SCNpilot_cont_500_bf_scaffold_874_22
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18507..19151)
DNA (645bp) protein (215aa)
cytochrome C oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase subunit III n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWN1_NITHN
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:ADE15688.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_cont_500_bf_scaffold_874_23
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19144..20745)
DNA (1602bp) protein (534aa)
cytochrome-c oxidase (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome C oxidase subunit I n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000301F116
Putative cytochrome c oxidase subunit I {ECO:0000313|EMBL:GAO38475.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_500_bf_scaffold_874_24
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20742..21683)
DNA (942bp) protein (314aa)
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE51_9BACT rbh
Putative cytochrome c oxidase subunit II {ECO:0000313|EMBL:GAO38474.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_500_bf_scaffold_874_25
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21701..22084)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IHH0_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL61633.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_874_26
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22165..22836
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HM38_PSEST
Uncharacterized protein {ECO:0000313|EMBL:GAO38471.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
chaperone protein HtpG
SCNpilot_cont_500_bf_scaffold_874_27
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22833..25700
DNA (2868bp) protein (956aa)
molybdopterin oxidoreductase, iron-sulfur binding subunit; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-]
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HPE5_PSEST rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM73690.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
SCNpilot_cont_500_bf_scaffold_874_28
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25697..27052
DNA (1356bp) protein (452aa)
Polysulfide reductase NrfD n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKM2_TISMK
Polysulphide reductase NrfD family protein {ECO:0000313|EMBL:GAO38469.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
polysulfide reductase NrfD
SCNpilot_cont_500_bf_scaffold_874_29
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27045..27575
DNA (531bp) protein (177aa)
Transmembrane prediction n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8I3_RHILS
Uncharacterized protein {ECO:0000313|EMBL:GAO38468.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
transmembrane prediction
Displaying items 1-30 of 52 in total

View Taxonomy