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SCNpilot_cont_500_bf_scaffold_13290

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_13290_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..506
DNA (504bp) protein (168aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=HSLU_NITHX
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000255|HAMAP-Rule:MF_00249}; Unfoldase HslU {ECO:0000255|HAMAP-Rule:MF_00249}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_13290_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(592..1176)
DNA (585bp) protein (195aa)
Smr protein/MutS2 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWG4_NITWN
Smr protein/MutS2
Smr protein/MutS2 {ECO:0000313|EMBL:ABA03377.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_13290_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1173..1862)
DNA (690bp) protein (230aa)
MltA; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
MltA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRX8_NITHX
MltA {ECO:0000313|EMBL:ABE61019.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_13290_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1898..2515)
DNA (618bp) protein (206aa)
MltA; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
MltA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRX8_NITHX
MltA {ECO:0000313|EMBL:ABE61019.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_13290_5
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2568..3272)
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWG6_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03375.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_13290_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3733..4221
DNA (489bp) protein (163aa)
Protein-export protein SecB n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=SECB_NITWN rbh
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB rbh
Protein-export protein SecB {ECO:0000255|HAMAP-Rule:MF_00821}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_13290_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4439..6892)
DNA (2454bp) protein (818aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS23_NITHX rbh
SCNpilot_cont_500_bf_scaffold_13290_8
unknown

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comp(6889..7341)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_13290_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7338..7787)
DNA (450bp) protein (150aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00281};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; Short=PheRS {ECO:0000255|HAMAP-Rule:MF_00281};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=SYFA_NITWN
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_500_bf_scaffold_13290_10].
SCNpilot_cont_500_bf_scaffold_13290_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7760..8380)
DNA (621bp) protein (207aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00281};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; Short=PheRS {ECO:0000255|HAMAP-Rule:MF_00281};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=SYFA_NITHX
SCNpilot_cont_500_bf_scaffold_13290_11
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8567..8857)
DNA (291bp) protein (97aa)
50S ribosomal protein L20 n=2 Tax=Nitrobacter RepID=RL20_NITWN
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Displaying 11 items

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