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SCNpilot_cont_500_bf_scaffold_1445

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1445_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..374
DNA (372bp) protein (124aa)
Putative outer-membrane immunogenic protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR4_NITHX
outer-membrane immunogenic protein precursor
Putative outer-membrane immunogenic protein {ECO:0000313|EMBL:ABE63883.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(655..870)
DNA (216bp) protein (72aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR3_NITHX
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABE63884.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1042..1896)
DNA (855bp) protein (285aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY20_9BRAD
hypothetical protein; K07115
SCNpilot_cont_500_bf_scaffold_1445_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2082..2699)
DNA (618bp) protein (206aa)
ribonuclease T2; K01166 ribonuclease T2 [EC:3.1.27.1]
Ribonuclease T2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR1_NITHX
Ribonuclease T2 {ECO:0000313|EMBL:ABE63886.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2919..3383)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIR0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63887.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3608..3898
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIQ9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63888.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3954..4484
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIQ8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63889.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_8
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4682..6223)
DNA (1542bp) protein (514aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] rbh
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Histidyl-tRNA synthetase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPK5_NITWN rbh
SCNpilot_cont_500_bf_scaffold_1445_9
unknown

Not on your lists

comp(6521..6754)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1445_10
unknown

Not on your lists

7403..7552
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1445_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8297..9226
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HAL8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ERF81808.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1445_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9336..12506)
DNA (3171bp) protein (1057aa)
RND efflux system protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKF2_9BRAD
RND efflux system protein {ECO:0000313|EMBL:EGP08321.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_cont_500_bf_scaffold_1445_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12515..13675)
DNA (1161bp) protein (387aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PNT7_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKS42489.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative multidrag resistance protein
SCNpilot_cont_500_bf_scaffold_1445_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13862..14650
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLK3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41659.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1445_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14679..15038)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQ63_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41660.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1445_16
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16068..16583)
DNA (516bp) protein (172aa)
Heme utilization protein HuvX n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQ61_NITWN rbh
hypothetical protein; K07227 hypothetical protein rbh
Heme utilization protein HuvX {ECO:0000313|EMBL:ABA05580.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_1445_17
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16622..16957)
DNA (336bp) protein (112aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQ62_NITWN
antibiotic biosynthesis monooxygenase; K07145
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ABA05579.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_1445_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17081..19447)
DNA (2367bp) protein (789aa)
TonB-dependent heme/hemoglobin receptor family protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LU9_RHOP5 rbh
TonB-dependent heme/hemoglobin receptor family protein; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent heme/hemoglobin receptor family protein {ECO:0000313|EMBL:ABJ07085.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_1445_19
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19795..19908
DNA (114bp) protein (38aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031321D2
Uncharacterized protein {ECO:0000313|EMBL:EJZ33786.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1445_20
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19905..20885
DNA (981bp) protein (327aa)
hemin ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037D7ADA
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44913.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1445_21
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20882..21979
DNA (1098bp) protein (366aa)
ABC-type Fe3+-siderophore transport system permease component n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQ64_NITWN rbh
ABC-type Fe3+-siderophore transport system permease component; K02015 iron complex transport system permease protein rbh
ABC-type Fe3+-siderophore transport system permease component {ECO:0000313|EMBL:ABA05577.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_1445_22
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21976..22773
DNA (798bp) protein (266aa)
hmuV; hemin importer ATP-binding subunit (EC:3.6.3.30); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] rbh
Hemin import ATP-binding protein HmuV {ECO:0000255|HAMAP-Rule:MF_01718}; EC=3.6.3.- {ECO:0000255|HAMAP-Rule:MF_01718};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Hemin import ATP-binding protein HmuV n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=HMUV_NITWN rbh
SCNpilot_cont_500_bf_scaffold_1445_23
unknown

Not on your lists

23081..23356
DNA (276bp) protein (92aa)
molecular chaperone GroEL n=1 Tax=Methylopila sp. M107 RepID=UPI00036CC7AA
groEL; 60 KDA chaperonin; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_cont_500_bf_scaffold_1445_24
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23353..24246
DNA (894bp) protein (298aa)
60 kDa chaperonin 3 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=CH603_NITWN
groEL; molecular chaperone GroEL; K04077 chaperonin GroEL
60 kDa chaperonin 3 {ECO:0000255|HAMAP-Rule:MF_00600}; GroEL protein 3 {ECO:0000255|HAMAP-Rule:MF_00600}; Protein Cpn60 3 {ECO:0000255|HAMAP-Rule:MF_00600}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_1445_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24281..24589
DNA (309bp) protein (103aa)
60 kDa chaperonin 3 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=CH603_NITHX
groEL; chaperonin GroEL; K04077 chaperonin GroEL
60 kDa chaperonin 3 {ECO:0000255|HAMAP-Rule:MF_00600}; GroEL protein 3 {ECO:0000255|HAMAP-Rule:MF_00600}; Protein Cpn60 3 {ECO:0000255|HAMAP-Rule:MF_00600}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24696..25892
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIL5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63932.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25980..27200)
DNA (1221bp) protein (407aa)
Diguanylate cyclase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJG8_NITHX
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABE63629.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_28
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27742..28560)
DNA (819bp) protein (273aa)
Lytic murein transglycosylase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYB1_9BRAD
Lytic murein transglycosylase {ECO:0000313|EMBL:EAQ35024.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
lytic murein transglycosylase rbh
SCNpilot_cont_500_bf_scaffold_1445_29
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29214..29834
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJG4_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63633.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1445_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29864..30043)
DNA (180bp) protein (60aa)
intracellular protease; K05520 protease I [EC:3.2.-.-]
PfpI family intracellular protease n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P309_9BRAD
PfpI family intracellular protease {ECO:0000313|EMBL:EKS36967.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying items 1-30 of 32 in total

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