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SCNpilot_cont_500_bf_scaffold_1678

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1678_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..535)
DNA (534bp) protein (178aa)
PepSY-associated membrane protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X073_9BRAD
PepSY-associated membrane protein {ECO:0000313|EMBL:EAQ34364.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1678_2
Pseudomonas sp. GM50, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(738..3239)
DNA (2502bp) protein (834aa)
TonB-denpendent receptor n=1 Tax=Pseudomonas psychrophila RepID=UPI0002FE1AA0 rbh
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EJM60032.1}; Flags: Precursor;; TaxID=1144332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM50.;"
ferric alcaligin siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_500_bf_scaffold_1678_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3379..4365)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036014BE rbh
Uncharacterized protein {ECO:0000313|EMBL:KDP73371.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
FecR protein; K07165 transmembrane sensor
SCNpilot_cont_500_bf_scaffold_1678_4
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4454..4969)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000367BAA5
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABL71062.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_500_bf_scaffold_1678_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5593..6105
DNA (513bp) protein (171aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU69_METTR
Fec I like protein {ECO:0000313|EMBL:EKF18328.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_1678_6
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6107..7186
DNA (1080bp) protein (360aa)
Anti-FecI sigma factor, FecR n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU68_METTR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:EUB98242.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
fecR; iron siderophore sensor protein; K07165 transmembrane sensor
SCNpilot_cont_500_bf_scaffold_1678_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7179..8111)
DNA (933bp) protein (311aa)
Beta-lactamase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ61_NITHX rbh
beta-lactamase-like rbh
Beta-lactamase-like protein {ECO:0000313|EMBL:ABE61636.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8254..9468)
DNA (1215bp) protein (405aa)
acyl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Acyl-CoA dehydrogenase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ62_NITHX
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ABE61635.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9648..10724)
DNA (1077bp) protein (359aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II {ECO:0000313|EMBL:ABE61634.1}; EC=3.5.4.25 {ECO:0000313|EMBL:ABE61634.1};; EC=4.1.2.- {ECO:0000313|EMBL:ABE61634.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SV17_NITWN rbh
SCNpilot_cont_500_bf_scaffold_1678_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11068..12798)
DNA (1731bp) protein (577aa)
Transporter, CPA2 family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ64_NITHX rbh
sodium/hydrogen exchanger rbh
Transporter, CPA2 family {ECO:0000313|EMBL:ABE61633.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13176..13973)
DNA (798bp) protein (266aa)
UspA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIU6_NITHX rbh
hypothetical protein rbh
UspA {ECO:0000313|EMBL:ABE63851.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14284..14460
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPK3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61844.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14651..15028
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNW3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62084.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15617..17311
DNA (1695bp) protein (565aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) PF4_NITHX">RepID=Q1QPF4_NITHX
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor {ECO:0000313|EMBL:ABE61893.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17507..18730)
DNA (1224bp) protein (408aa)
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGK6_NITHX
hypothetical protein
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family {ECO:0000313|EMBL:ABE64641.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18752..18988)
DNA (237bp) protein (79aa)
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGK6_NITHX
hypothetical protein
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family {ECO:0000313|EMBL:ABE64641.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1678_17
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19243..20373
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WT08_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36848.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
SCNpilot_cont_500_bf_scaffold_1678_18
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20502..20819)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B436C
ArsR family transcriptional regulator {ECO:0000313|EMBL:EXL03240.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
regulatory protein ArsR
SCNpilot_cont_500_bf_scaffold_1678_19
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20997..22187
DNA (1191bp) protein (397aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Methyloferula stellata RepID=UPI0003740BDA
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGD96967.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfide-quinone reductase
Displaying 19 items

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