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SCNpilot_cont_500_bf_scaffold_1814

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1814_1
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(182..565)
DNA (384bp) protein (128aa)
zinc-binding CMP/dCMP deaminase; K01489 cytidine deaminase [EC:3.5.4.5]
CMP/dCMP deaminase zinc-binding n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A4R3_NITMS
CMP/dCMP deaminase zinc-binding {ECO:0000313|EMBL:ABX13367.1}; TaxID=436308 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
SCNpilot_cont_500_bf_scaffold_1814_2
Rhodococcus sp. MEB064, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(562..2406)
DNA (1845bp) protein (615aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0003095DD8
Contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ11742.1}; TaxID=1587522 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. MEB064.;"
SCNpilot_cont_500_bf_scaffold_1814_3
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2403..3353)
DNA (951bp) protein (317aa)
Uncharacterized protein {ECO:0000313|EMBL:CDK00541.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
SCNpilot_cont_500_bf_scaffold_1814_4
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3818..4918
DNA (1101bp) protein (367aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
DNA-cytosine methyltransferase (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1LBB8_9MICO rbh
SCNpilot_cont_500_bf_scaffold_1814_5
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5014..7734
DNA (2721bp) protein (907aa)
hypothetical protein n=1 Tax=Brachybacterium muris RepID=UPI00037DD0E8 rbh
Uncharacterized protein {ECO:0000313|EMBL:EWS82467.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1814_6
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7731..8702
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Brachybacterium muris RepID=UPI00035DF9E9
Uncharacterized protein {ECO:0000313|EMBL:EWS82468.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
SCNpilot_cont_500_bf_scaffold_1814_7
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8699..10597
DNA (1899bp) protein (633aa)
hypothetical protein n=1 Tax=Brachybacterium muris RepID=UPI0003498ABA rbh
MerR family transcriptional regulator {ECO:0000313|EMBL:EWS82323.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1814_8
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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10584..11486
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Brachybacterium muris RepID=UPI00036714E0
Uncharacterized protein {ECO:0000313|EMBL:EWS82469.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
SCNpilot_cont_500_bf_scaffold_1814_9
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11483..12214
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Brachybacterium muris RepID=UPI00034C64C5
Uncharacterized protein {ECO:0000313|EMBL:EWS82470.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
SCNpilot_cont_500_bf_scaffold_1814_10
Mycobacterium parascrofulaceum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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12251..12682
DNA (432bp) protein (144aa)
DNA mismatch endonuclease Vsr {ECO:0000313|EMBL:EFG74815.1}; EC=3.1.-.- {ECO:0000313|EMBL:EFG74815.1};; TaxID=525368 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium parascrofulaceum ATCC BAA-614.;"
DNA mismatch endonuclease Vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
DNA mismatch endonuclease Vsr n=1 Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5PGG1_9MYCO
SCNpilot_cont_500_bf_scaffold_1814_11
unknown

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comp(12696..13154)
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1814_12
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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13626..14756
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0003098B30
Integrase family protein (Modular protein) {ECO:0000313|EMBL:CDK00607.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
phage-related integrase
SCNpilot_cont_500_bf_scaffold_1814_trna_1
unknown

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comp(14972..15043)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1814_13
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(15126..16859)
DNA (1734bp) protein (578aa)
Pyruvate dehydrogenase (Pyruvate oxidase),thiamin-dependent, FAD-binding {ECO:0000313|EMBL:CDK01755.1}; EC=1.2.3.3 {ECO:0000313|EMBL:CDK01755.1};; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
pyruvate dehydrogenase (EC:1.2.5.1); K00156 pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
pyruvate dehydrogenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000368A383
SCNpilot_cont_500_bf_scaffold_1814_14
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(16920..17513)
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T2F8_LEIAQ
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERK71668.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
TetR family transcriptional regulator
Displaying 15 items

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