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SCNpilot_cont_500_bf_scaffold_4008

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4008_1
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..771)
DNA (771bp) protein (257aa)
Amidohydrolase family protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T4Z5_LEIAQ
Amidohydrolase family protein {ECO:0000313|EMBL:ERK72543.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4008_2
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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837..1727
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI00037EE5FD rbh
NAD dependent epimerase/dehydratase rbh
NAD dependent epimerase/dehydratase {ECO:0000313|EMBL:AAT89282.1}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
SCNpilot_cont_500_bf_scaffold_4008_3
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1871..2131
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2R9A5_LEIAQ
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
30S ribosomal protein S20
SCNpilot_cont_500_bf_scaffold_4008_4
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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2312..4657
DNA (2346bp) protein (782aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003643EB9 rbh
DNA/RNA helicase rbh
SCNpilot_cont_500_bf_scaffold_4008_5
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4667..5722)
DNA (1056bp) protein (352aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] rbh
Putative DNA polymerase III, delta subunit n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RSN7_LEIAQ rbh
Putative DNA polymerase III, delta subunit {ECO:0000313|EMBL:ERK71836.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCNpilot_cont_500_bf_scaffold_4008_6
unknown

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6734..7072
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4008_7
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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7202..8128
DNA (927bp) protein (309aa)
Autotransporter-associated beta strand repeat protein n=2 Tax=Chloroflexus RepID=A9WC61_CHLAA
autotransporter-associated beta strand repeat-containing protein
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:ABY33454.1}; Flags: Precursor;; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
SCNpilot_cont_500_bf_scaffold_4008_8
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8106..8759)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI0003766C9D
Putative DNA uptake protein {ECO:0000313|EMBL:GAD32957.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
DNA uptake protein; K02237 competence protein ComEA
SCNpilot_cont_500_bf_scaffold_4008_9
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8884..9066)
DNA (183bp) protein (61aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Leucine--tRNA ligase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RLP0_LEIAQ
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_500_bf_scaffold_4008_10].
leucyl-tRNA synthetase
SCNpilot_cont_500_bf_scaffold_4008_10
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9008..10480)
DNA (1473bp) protein (491aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Leucine--tRNA ligase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RLP0_LEIAQ
leucyl-tRNA synthetase
Displaying 10 items

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