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SCNpilot_cont_500_bf_scaffold_2353

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2353_1
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..649
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000361C4B5
Uncharacterized protein {ECO:0000313|EMBL:ERK72198.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2353_2
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

646..2448
DNA (1803bp) protein (601aa)
Uncharacterized protein (Fragment) n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RUH5_LEIAQ rbh
Uncharacterized protein {ECO:0000313|EMBL:ERK72199.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
type IV secretory pathway, VirD4 component rbh
SCNpilot_cont_500_bf_scaffold_2353_3
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2448..2852
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RTT2_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:ERK72191.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCNpilot_cont_500_bf_scaffold_2353_4
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2849..3319
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00036EFAC0 rbh
Uncharacterized protein {ECO:0000313|EMBL:ERK72192.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2353_5
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3432..3875
DNA (444bp) protein (148aa)
Single-stranded DNA-binding protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RTR8_LEIAQ
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
ssb1; Single-stranded DNA-binding protein
SCNpilot_cont_500_bf_scaffold_2353_6
Rhodococcus rhodochrous, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4136..6154
DNA (2019bp) protein (673aa)
Uncharacterized protein n=1 Tax=Streptococcus anginosus subsp. whileyi CCUG 39159 RepID=I0S798_STRAP rbh
Uncharacterized protein {ECO:0000313|EMBL:ETT27862.1}; TaxID=1429046 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodochrous ATCC 21198.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2353_7
unknown

Not on your lists

6306..6701
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Humibacter albus RepID=UPI0003B7927E
SCNpilot_cont_500_bf_scaffold_2353_8
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6709..9480)
DNA (2772bp) protein (924aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI0003681644
Uncharacterized protein {ECO:0000313|EMBL:ERK71283.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
trwC4; conjugative relaxase TrwC
SCNpilot_cont_500_bf_scaffold_2353_9
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9755..10606)
DNA (852bp) protein (284aa)
Uncharacterized protein (Fragment) n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T5G1_LEIAQ rbh
Uncharacterized protein {ECO:0000313|EMBL:ERK72733.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2353_10
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10913..11245
DNA (333bp) protein (111aa)
Transcriptional regulator, ArsR family n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RVD0_LEIAQ
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ERK72741.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2353_11
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11647..12747
DNA (1101bp) protein (367aa)
Putative transposase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RPZ7_BLASD
putative transposase
Putative transposase {ECO:0000313|EMBL:CCG02766.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_cont_500_bf_scaffold_2353_12
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12784..13461)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003798B81 rbh
Cobalt transporter {ECO:0000313|EMBL:KHK98971.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2353_13
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13458..13802)
DNA (345bp) protein (115aa)
ArsR family transcriptional regulator n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00035C54C0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAT88744.1}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
SCNpilot_cont_500_bf_scaffold_2353_14
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14303..15349
DNA (1047bp) protein (349aa)
transposase n=1 Tax=Curtobacterium sp. B18 RepID=UPI000347E5BF rbh
putative transposase
Putative transposase {ECO:0000313|EMBL:CCG02766.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_cont_500_bf_scaffold_2353_15
unknown

Not on your lists

comp(15379..15768)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2353_16
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16077..16379
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000367B930
Uncharacterized protein {ECO:0000313|EMBL:ERK73244.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCNpilot_cont_500_bf_scaffold_2353_17
Gordonia hirsuta, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16621..16758)
DNA (138bp) protein (46aa)
DNA ligase D n=1 Tax=Gordonia hirsuta DSM 44140 = NBRC 16056 RepID=L7L9K4_9ACTO
DNA ligase D {ECO:0000313|EMBL:GAC57825.1}; TaxID=1121927 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia hirsuta DSM 44140 = NBRC 16056.;"
SCNpilot_cont_500_bf_scaffold_2353_18
unknown

Not on your lists

16999..17370
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2353_19
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17444..17785
DNA (342bp) protein (114aa)
NADH-quinone oxidoreductase subunit {ECO:0000256|RuleBase:RU003639}; EC=1.6.5.11 {ECO:0000256|RuleBase:RU003639};; Flags: Precursor;; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH dehydrogenase subunit A n=1 Tax=Humibacter albus RepID=UPI0003B3E61C
SCNpilot_cont_500_bf_scaffold_2353_20

Not on your lists

17776..18066
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Humibacter albus RepID=UPI0003B3AB0D
Uncharacterized protein {ECO:0000313|EMBL:AKG47150.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
Displaying 20 items

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