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SCNpilot_cont_500_bf_scaffold_704

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_704_1
bacterium YEK0313, Bacteria

Not on your lists

1..276
DNA (276bp) protein (92aa)
Sodium/calcium exchanger membrane region n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WI21_9SPHN
Sodium/proton antiporter ChaA {ECO:0000313|EMBL:CEJ12341.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
sodium/calcium exchanger membrane region; K07300 Ca2+:H+ antiporter
SCNpilot_cont_500_bf_scaffold_704_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

378..710
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZB9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM29311.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_704_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(753..1907)
DNA (1155bp) protein (385aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030AA864 rbh
SCNpilot_cont_500_bf_scaffold_704_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1904..2503)
DNA (600bp) protein (200aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
shikimate kinase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000377DD12
SCNpilot_cont_500_bf_scaffold_704_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2750..2902
DNA (153bp) protein (51aa)
histidine kinase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034D59C1
Uncharacterized protein {ECO:0000313|EMBL:KFC63595.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_704_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3014..3943
DNA (930bp) protein (310aa)
Tyrosine recombinase XerD n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMC0_9RHIZ rbh
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tyrosine recombinase XerD; K04763 integrase/recombinase XerD
SCNpilot_cont_500_bf_scaffold_704_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3950..4648)
DNA (699bp) protein (233aa)
Carbonic anhydrase {ECO:0000313|EMBL:KFC63708.1}; EC=4.2.1.1 {ECO:0000313|EMBL:KFC63708.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
carbonic anhydrase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZH2_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_704_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4718..5110)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LLP6_9RHOB
UPF0235 protein A33M_2828 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_704_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5195..6688
DNA (1494bp) protein (498aa)
Putative amidase {ECO:0000313|EMBL:KFC71586.1}; EC=6.3.5.- {ECO:0000313|EMBL:KFC71586.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative amidase (EC:3.5.1.-) rbh
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000305CA10 rbh
SCNpilot_cont_500_bf_scaffold_704_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6757..8343
DNA (1587bp) protein (529aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003196538 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC71585.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_704_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8407..9999)
DNA (1593bp) protein (531aa)
hypothetical protein; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030D12F3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC71584.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_704_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10133..10423)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YK11_BRASO
Uncharacterized protein {ECO:0000313|EMBL:KFC63710.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K02221 YggT family protein
SCNpilot_cont_500_bf_scaffold_704_trna_1
unknown

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10543..10615
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_704_13
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10770..11480)
DNA (711bp) protein (237aa)
ABC transporter related n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TF35_BURPP
ABC transporter family protein {ECO:0000313|EMBL:AJZ61286.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_704_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11480..12277)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037FE0B4
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:BAF88790.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_704_15
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12274..14130)
DNA (1857bp) protein (619aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5U3_9PROT rbh
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EHL97402.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
branched-chain amino acid ABC transporter, permease component; K01997 branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_704_16
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14314..15531)
DNA (1218bp) protein (406aa)
Receptor family ligand-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPD5_9PROT rbh
Receptor family ligand-binding protein {ECO:0000313|EMBL:EFH10836.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
branched-chain amino acid ABC transporter,periplasmic substrate-binding component
SCNpilot_cont_500_bf_scaffold_704_17
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16145..16918
DNA (774bp) protein (258aa)
ferredoxin-NADP(+) reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
ferredoxin--NADP reductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030B47FC
Flavodoxin reductase family protein {ECO:0000313|EMBL:EJN12304.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCNpilot_cont_500_bf_scaffold_704_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17037..19400
DNA (2364bp) protein (788aa)
Putative carbon-monoxide dehydrogenase large subunit {ECO:0000313|EMBL:KFC75894.1}; EC=1.2.99.2 {ECO:0000313|EMBL:KFC75894.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aldehyde oxidase/xanthine dehydrogenase; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ILF0_METNO
SCNpilot_cont_500_bf_scaffold_704_19
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19407..19907)
DNA (501bp) protein (167aa)
MarR family transcriptional regulator n=84 Tax=Pseudomonas RepID=R9ZEM7_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KJV11147.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_704_20
Pseudomonas sp. SE83, Proteobacteria, Bacteria

Not on your lists

20105..21778
DNA (1674bp) protein (558aa)
Acylase ACY 1; Includes:; Cephalosporin acylase; EC=3.5.1.-;; GL-7ACA acylase; Includes:; Gamma-glutamyltranspeptidase; Short=GGT;; EC=2.3.2.2;; Glutathione hydrolase; EC=3.4.19.13;; Contains:; Acylase ACY 1 large subunit; Contains:; Acylase ACY 1 small subunit; TaxID=309 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp. (strain SE83).;"
gamma-glutamyltranspeptidase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Acylase ACY 1 n=1 Tax=Pseudomonas sp. (strain SE83) RepID=PAC1_PSES3 rbh
SCNpilot_cont_500_bf_scaffold_704_21
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21791..22507)
DNA (717bp) protein (239aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0N3_9RHIZ rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EIM29775.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative branched-chain amino acid ABC transporter ATP-binding protein
SCNpilot_cont_500_bf_scaffold_704_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22494..23252)
DNA (759bp) protein (253aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0N4_9RHIZ rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EIM29776.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Putative branched-chain amino acid ABC transporter, ATP-binding protein
SCNpilot_cont_500_bf_scaffold_704_23
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23249..24259)
DNA (1011bp) protein (337aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0N5_9RHIZ rbh
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EIM29777.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
branched chain amino acid ABC transporter, membrane spanning protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_704_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24256..25119)
DNA (864bp) protein (288aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0N6_9RHIZ rbh
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EIM29778.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_704_25
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25208..26404)
DNA (1197bp) protein (399aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0N7_9RHIZ
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EIM29779.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
livJ; branched amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_704_26
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26519..27691)
DNA (1173bp) protein (391aa)
4-hydroxybenzoate 3-monooxygenase; K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] rbh
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:ABS67925.1}; EC=1.14.13.2 {ECO:0000313|EMBL:ABS67925.1};; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIT2_XANP2 rbh
SCNpilot_cont_500_bf_scaffold_704_27
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27818..28693
DNA (876bp) protein (292aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIT1_XANP2
helix-turn-helix domain-containing protein
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ABS67924.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_704_28
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28690..29847)
DNA (1158bp) protein (386aa)
fumarate lyase; K01857 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] rbh
3-carboxy-cis,cis-muconate cycloisomerase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VM43_9SPHN rbh
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:EJU09118.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_cont_500_bf_scaffold_704_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29863..31098)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B8549
Uncharacterized protein {ECO:0000313|EMBL:KFC64694.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
Displaying items 1-30 of 56 in total

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