ggKbase home page

SCNpilot_cont_500_bf_scaffold_827

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_827_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1148
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E51EC0 rbh
Glycine cleavage system T protein (Aminomethyltransferase) {ECO:0000313|EMBL:KFC75450.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD dependent oxidoreductase
SCNpilot_cont_500_bf_scaffold_827_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1222..1728
DNA (507bp) protein (169aa)
DinB family protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQH1_METTR
Putative damage inducible protein {ECO:0000313|EMBL:KFC75449.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_827_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1778..2281)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAH3_STAND
Uncharacterized protein {ECO:0000313|EMBL:KFC75448.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_827_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2458..3090
DNA (633bp) protein (211aa)
Malate dehydrogenase (Oxaloacetate-decarboxylating)(NADP+) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HHT0_9BRAD
Malate dehydrogenase (Oxaloacetate-decarboxylating)(NADP+) {ECO:0000313|EMBL:KFC75447.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
RhtB family transporter
SCNpilot_cont_500_bf_scaffold_827_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3108..3674
DNA (567bp) protein (189aa)
Chromate transporter n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IB71_BEII9
Bradyrhizobium elkanii strain UASWS1015 Contig148, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53229.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
chromate transporter; K07240 chromate transporter
SCNpilot_cont_500_bf_scaffold_827_6
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3674..4213
DNA (540bp) protein (180aa)
Chromate transporter n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UFT2_ADVKW
chromate transporter
Chromate transporter {ECO:0000313|EMBL:AFK63870.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_500_bf_scaffold_827_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4333..5541
DNA (1209bp) protein (403aa)
carboxypeptidase G2; K01295 glutamate carboxypeptidase [EC:3.4.17.11]
Carboxypeptidase G2 n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G180_9BRAD
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:KFC75445.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_827_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5549..6145)
DNA (597bp) protein (199aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0GVC3_RHILT
Transcriptional regulator {ECO:0000313|EMBL:EJB01453.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
TetR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_827_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6232..6453
DNA (222bp) protein (74aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC63920.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_827_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6475..8316)
DNA (1842bp) protein (614aa)
Glycosyl hydrolase, glucoamylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM36_9RHIZ
Glycoside hydrolase 15-related protein {ECO:0000313|EMBL:KFC75444.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycoside hydrolase 15-related protein
SCNpilot_cont_500_bf_scaffold_827_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8319..9128)
DNA (810bp) protein (270aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
HAD family hydrolase; K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UNW0_METS4
SCNpilot_cont_500_bf_scaffold_827_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9409..10953
DNA (1545bp) protein (515aa)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000256|RuleBase:RU362045}; EC=2.4.1.15 {ECO:0000256|RuleBase:RU362045};; Osmoregulatory trehalose synthesis protein A {ECO:0000256|RuleBase:RU362045}; Trehalose-6-phosphate synthase {ECO:0000256|RuleBase:RU362045}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
family 20 glycosyl transferase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] rbh
Glycosyl transferase family 20 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IPJ5_METNO rbh
SCNpilot_cont_500_bf_scaffold_827_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11132..13399
DNA (2268bp) protein (756aa)
protein PtsP; K08484 phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] rbh
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMA0_9RHIZ rbh
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:KFC75441.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_827_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13447..14532
DNA (1086bp) protein (362aa)
Peptide chain release factor 1 n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=RF1_METRJ
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
prfA; peptide chain release factor 1; K02835 peptide chain release factor 1
SCNpilot_cont_500_bf_scaffold_827_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14607..14858
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC75439.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_827_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14945..15751
DNA (807bp) protein (269aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" sourc
hemK; modification methylase HemK; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6J6_AZOL4
SCNpilot_cont_500_bf_scaffold_827_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16133..17140
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMA4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC75437.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_827_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17217..18002)
DNA (786bp) protein (262aa)
Putative Fe-S protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMA8_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC75436.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MOSC domain-containing protein; K07140
SCNpilot_cont_500_bf_scaffold_827_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18085..18399)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1E5_POLGS
Uncharacterized protein {ECO:0000313|EMBL:KFC75435.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_827_20
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18573..21086
DNA (2514bp) protein (838aa)
ATPase AAA n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034C40EA
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_cont_500_bf_scaffold_827_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21159..21782)
DNA (624bp) protein (208aa)
methionine biosynthesis MetW n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000362E038 rbh
Methionine biosynthesis protein MetW {ECO:0000313|EMBL:KFC75433.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
methionine biosynthesis protein MetW rbh
SCNpilot_cont_500_bf_scaffold_827_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21785..22954)
DNA (1170bp) protein (390aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
homoserine O-acetyltransferase; K00641 homoserine O-acetyltransferase [EC:2.3.1.31] rbh
homoserine O-acetyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000303657F rbh
SCNpilot_cont_500_bf_scaffold_827_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23124..23867
DNA (744bp) protein (248aa)
Chorismate mutase I {ECO:0000313|EMBL:KFC75431.1}; EC=5.4.99.5 {ECO:0000313|EMBL:KFC75431.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035E4532
hypothetical protein
SCNpilot_cont_500_bf_scaffold_827_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23906..25006
DNA (1101bp) protein (367aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
Histidinol-phosphate aminotransferase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=HIS8_METNO rbh
SCNpilot_cont_500_bf_scaffold_827_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25012..25950
DNA (939bp) protein (313aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:KFC75429.1}; EC=1.3.1.12 {ECO:0000313|EMBL:KFC75429.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
prephenate dehydrogenase; K00220 cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] rbh
cyclohexadienyl dehydrogenase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003786960 rbh
SCNpilot_cont_500_bf_scaffold_827_trna_1
unknown

Not on your lists

26049..26121
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_827_26
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26381..27736
DNA (1356bp) protein (452aa)
Amidohydrolase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A329_9PROT rbh
Amidohydrolase {ECO:0000313|EMBL:EHL99459.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B
SCNpilot_cont_500_bf_scaffold_827_27
bacterium YEK0313, Bacteria

Not on your lists

27962..29032
DNA (1071bp) protein (357aa)
ABC transporter n=1 Tax=Roseomonas sp. B5 RepID=UPI0003115E9C
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:CEJ15307.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_827_28
bacterium YEK0313, Bacteria

Not on your lists

29029..30012
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D2C694 rbh
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:CEJ15308.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
oligopeptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_827_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30040..31506
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ED882D rbh
Putative phosphonoacetate hydrolase {ECO:0000313|EMBL:KFC70490.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
type I phosphodiesterase/nucleotide pyrophosphatase
Displaying items 1-30 of 57 in total

View Taxonomy