ggKbase home page

SCNpilot_cont_500_bf_scaffold_837

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_837_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..694)
DNA (693bp) protein (231aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC:2.1.1.-); K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F8417B
SCNpilot_cont_500_bf_scaffold_837_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

809..1705
DNA (897bp) protein (299aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] rbh
Formamidopyrimidine-DNA glycosylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYP3_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_837_3
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

1759..2559
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI0002FBD8C1 rbh
Metal-dependent hydrolase {ECO:0000313|EMBL:KIJ75377.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
endonuclease/exonuclease/phosphatase-like protein rbh
SCNpilot_cont_500_bf_scaffold_837_4
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2673..3230)
DNA (558bp) protein (186aa)
lipocalin n=1 Tax=alpha proteobacterium L41A RepID=UPI00036A3FA7
Lipocalin {ECO:0000313|EMBL:KJV40009.1}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
lipocalin; K03098 outer membrane lipoprotein Blc
SCNpilot_cont_500_bf_scaffold_837_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3422..4195
DNA (774bp) protein (258aa)
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:KFC70856.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KFC70856.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
fadB_2; FadB_2 (EC:4.2.1.17); K01692 enoyl-CoA hydratase [EC:4.2.1.17] rbh
enoyl-CoA hydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318EF72
SCNpilot_cont_500_bf_scaffold_837_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4305..5288
DNA (984bp) protein (328aa)
L-threonine ammonia-lyase {ECO:0000313|EMBL:KFC70857.1}; EC=4.3.1.19 {ECO:0000313|EMBL:KFC70857.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19] rbh
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUF3_METNO rbh
SCNpilot_cont_500_bf_scaffold_837_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5470..5736
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Kaistia granuli RepID=UPI00036C965C
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
SCNpilot_cont_500_bf_scaffold_837_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6511..8031
DNA (1521bp) protein (507aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DF7F70 rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein rbh
SCNpilot_cont_500_bf_scaffold_837_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8187..9302
DNA (1116bp) protein (372aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] rbh
DNA polymerase III subunit beta n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB0DBC rbh
SCNpilot_cont_500_bf_scaffold_837_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9313..10440
DNA (1128bp) protein (376aa)
DNA replication and repair protein RecF n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYP9_9RHIZ rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF rbh
SCNpilot_cont_500_bf_scaffold_837_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10517..11131
DNA (615bp) protein (205aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KFK0_METEX
Lysine exporter protein {ECO:0000313|EMBL:KFC70863.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lysine exporter
SCNpilot_cont_500_bf_scaffold_837_12
bacterium YEK0313, Bacteria

Not on your lists

comp(11164..11532)
DNA (369bp) protein (123aa)
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Halomonas sp. GFAJ-1 RepID=H0IYN0_9GAMM
Rieske [2Fe-2S] domain protein {ECO:0000313|EMBL:CEJ14821.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Rieske (2Fe-2S) domain-containing protein
SCNpilot_cont_500_bf_scaffold_837_13
bacterium YEK0313, Bacteria

Not on your lists

comp(11549..12658)
DNA (1110bp) protein (370aa)
4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] rbh
4-hydroxyphenylpyruvate dioxygenase n=2 Tax=Halomonas RepID=L9UEH8_9GAMM rbh
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:CEJ14822.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_837_14
Halomonas sp. KHS3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12779..13249
DNA (471bp) protein (157aa)
AsnC family transcriptional regulator n=1 Tax=Halomonas sp. A3H3 RepID=T2L7Z0_9GAMM
AsnC family transcriptional regulator {ECO:0000313|EMBL:KIN13682.1}; TaxID=866350 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. KHS3.;"
AsnC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_837_15
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13378..14157
DNA (780bp) protein (260aa)
DNA-binding protein with HTH domain n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QQV2_9BRAD
DNA-binding protein with HTH domain {ECO:0000313|EMBL:EIG62158.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
LuxR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_837_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14177..14947)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003614761
putative oxidoreductase, SDR family
Putative oxidoreductase, SDR family {ECO:0000313|EMBL:AGU47557.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_837_17
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14961..15791)
DNA (831bp) protein (277aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodococcus imtechensis RKJ300 = JCM 13270 RepID=I0WKR5_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:AKH98870.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
SCNpilot_cont_500_bf_scaffold_837_18
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15816..16436)
DNA (621bp) protein (207aa)
Glutathione S-transferase n=1 Tax=Achromobacter piechaudii HLE RepID=J4YBL6_9BURK
Glutathione S-transferase {ECO:0000313|EMBL:EJO28556.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
glutathione S-transferase
SCNpilot_cont_500_bf_scaffold_837_19
bacterium YEK0313, Bacteria

Not on your lists

comp(16450..18147)
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HL26_9SPHN rbh
3-oxosteroid 1-dehydrogenase {ECO:0000313|EMBL:CEJ11745.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative 3-oxosteroid 1-dehydrogenase
SCNpilot_cont_500_bf_scaffold_837_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18158..18901)
DNA (744bp) protein (248aa)
Putative oxidoreductase, SDR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X5F0_VARPD
putative oxidoreductase, SDR family
Putative oxidoreductase, SDR family {ECO:0000313|EMBL:AGU47564.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_837_21
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18934..19647)
DNA (714bp) protein (238aa)
ABC transporter (EC:3.6.3.-); K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter n=1 Tax=Achromobacter piechaudii HLE RepID=J4QLB9_9BURK
ABC transporter {ECO:0000313|EMBL:EJO28560.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
SCNpilot_cont_500_bf_scaffold_837_22
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19640..20437)
DNA (798bp) protein (266aa)
Putative uncharacterized protein (Fragment) n=2 Tax=Achromobacter xylosoxidans C54 RepID=E5UGX5_ALCXX
Uncharacterized protein {ECO:0000313|EMBL:EFV81816.1}; Flags: Fragment;; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
braF1; high-affinity branched-chain amino acid transport ATP-binding protein BRAF 1; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_837_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20427..21410)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003773E9D
putative high-affinity branched-chain amino acid ABC transporter, permease protein
Putative high-affinity branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU47560.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_837_24
bacterium YEK0313, Bacteria

Not on your lists

comp(21416..22318)
DNA (903bp) protein (301aa)
Inner-membrane translocator n=1 Tax=Achromobacter piechaudii HLE RepID=J4Y404_9BURK
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ11739.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1
SCNpilot_cont_500_bf_scaffold_837_25
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22426..23634)
DNA (1209bp) protein (403aa)
ABC branched chain amino acid family transporter,periplasmic ligand binding protein n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XPU5_ALCXX
ABC branched chain amino acid family transporter,periplasmic ligand binding protein
ABC branched chain amino acid family transporter,periplasmic ligand binding protein {ECO:0000313|EMBL:CCH06636.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_cont_500_bf_scaffold_837_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23801..24631)
DNA (831bp) protein (277aa)
GntR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HU71_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EHK55707.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_837_27
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24664..25098)
DNA (435bp) protein (145aa)
Transcriptional regulator, MarR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FI6_MESSB
MarR family transcriptional regulator {ECO:0000313|EMBL:KFG69052.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_837_28
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25255..26619
DNA (1365bp) protein (455aa)
homogentisate 1,2-dioxygenase (EC:1.13.11.5); K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5] rbh
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacteriu
Homogentisate 1,2-dioxygenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKJ1_METNO rbh
SCNpilot_cont_500_bf_scaffold_837_29
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26761..28074
DNA (1314bp) protein (438aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZAY1_METPB rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACB79219.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_cont_500_bf_scaffold_837_30
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28086..29414
DNA (1329bp) protein (443aa)
fumarylacetoacetase (EC:3.7.1.2); K01555 fumarylacetoacetase [EC:3.7.1.2] rbh
Fumarylacetoacetase {ECO:0000313|EMBL:ACL56197.1}; EC=3.7.1.2 {ECO:0000313|EMBL:ACL56197.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Fumarylacetoacetase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKJ0_METNO rbh
Displaying items 1-30 of 39 in total

View Taxonomy