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SCNpilot_cont_500_bf_scaffold_1182

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Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1182_1

Not on your lists

comp(2..370)
DNA (369bp) protein (123aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48494.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_500_bf_scaffold_1182_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(972..1793)
DNA (822bp) protein (274aa)
Putative short-chain dehydrogenase {ECO:0000313|EMBL:KJX85959.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KJX85959.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Short-chain dehydrogenase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CG86_AGRT5 rbh
short-chain dehydrogenase; K07124 rbh
SCNpilot_cont_500_bf_scaffold_1182_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1960..3234)
DNA (1275bp) protein (425aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRY7_RHITR rbh
3-oxoacyl-[acyl-carrier-protein] synthase rbh
SCNpilot_cont_500_bf_scaffold_1182_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3227..3556)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B5025
Uncharacterized protein {ECO:0000313|EMBL:AIJ46253.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
Bcr/CflA family multidrug resistance transporter
SCNpilot_cont_500_bf_scaffold_1182_5
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3553..4146)
DNA (594bp) protein (198aa)
Transcriptional regulator n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KJT0_MESAW
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGB44790.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_500_bf_scaffold_1182_6
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4196..5350
DNA (1155bp) protein (385aa)
RND family efflux transporter, MFP subunit n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KKC9_MESAW
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGB44789.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_500_bf_scaffold_1182_7
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5347..8469
DNA (3123bp) protein (1041aa)
Acriflavin resistance protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IW37_METNO
Acriflavin resistance protein {ECO:0000313|EMBL:ACL62627.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
acriflavin resistance protein
SCNpilot_cont_500_bf_scaffold_1182_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8466..8915
DNA (450bp) protein (150aa)
Putative transcriptional regulator, MarR family n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A0I8_RHIFH
MarR family transcriptional regulator
Putative transcriptional regulator, MarR family {ECO:0000313|EMBL:CCE97384.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_500_bf_scaffold_1182_9
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9047..9820)
DNA (774bp) protein (258aa)
Transcriptional regulator, IclR family n=1 Tax=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) RepID=Q1R0U9_CHRSD
IclR family transcriptional regulator {ECO:0000313|EMBL:EZH78732.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
IclR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1182_10
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9822..10595)
DNA (774bp) protein (258aa)
IclR family transcriptional regulator n=1 Tax=Curvibacter lanceolatus RepID=UPI00036D2050
IclR family transcriptional regulator {ECO:0000313|EMBL:KDR30485.1}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
regulatory proteins, IclR
SCNpilot_cont_500_bf_scaffold_1182_11
Kitasatospora putterlickiae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10711..11550
DNA (840bp) protein (280aa)
shikimate dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Putative shikimate 5-dehydrogenase n=1 Tax=Kitasatospora putterlickiae RepID=Q0PM06_9ACTO rbh
Putative shikimate 5-dehydrogenase {ECO:0000313|EMBL:ABH05058.1}; TaxID=221725 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora putterlickiae.;"
SCNpilot_cont_500_bf_scaffold_1182_12
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11593..12261
DNA (669bp) protein (223aa)
Blr6399 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89GE7_BRADU
ABC transporter permease; K02029 polar amino acid transport system permease protein
Blr6399 protein {ECO:0000313|EMBL:BAC51663.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_500_bf_scaffold_1182_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12268..12918
DNA (651bp) protein (217aa)
Blr6398 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89GE6_BRADU rbh
ABC transporter permease; K02029 polar amino acid transport system permease protein rbh
Blr6398 protein {ECO:0000313|EMBL:BAC51664.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_500_bf_scaffold_1182_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12954..13613
DNA (660bp) protein (220aa)
Blr6400 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89GE5_BRADU
ABC transporter substrate-binding protein
Blr6400 protein {ECO:0000313|EMBL:BAC51665.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_500_bf_scaffold_1182_15
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13765..14535
DNA (771bp) protein (257aa)
ABC transporter-like protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ABC transporter n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036E5E88
Amino acid ABC transporter ATP-binding protein, PAAT family {ECO:0000313|EMBL:ABM36802.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_cont_500_bf_scaffold_1182_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

14590..15057
DNA (468bp) protein (156aa)
acyl dehydratase n=1 Tax=Burkholderia glumae RepID=UPI0002F2D06E
MaoC-like protein dehydratase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_cont_500_bf_scaffold_1182_17
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15057..16586
DNA (1530bp) protein (510aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Acetate CoA-transferase YdiF n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5Z9_9RHOO rbh
coenzyme A transferase rbh
SCNpilot_cont_500_bf_scaffold_1182_18
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16616..17602
DNA (987bp) protein (329aa)
NADP-dependent aryl-alcohol dehydrogenase n=1 Tax=Alicyclobacillus acidoterrestris ATCC 49025 RepID=T0BQW0_9BACL
NADP-dependent aryl-alcohol dehydrogenase {ECO:0000313|EMBL:EPZ42935.1}; TaxID=1356854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidoterrestris ATCC 49025.;"
oxidoreductase
SCNpilot_cont_500_bf_scaffold_1182_19
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17760..18653
DNA (894bp) protein (298aa)
intradiol ring-cleavage dioxygenase; K03381 catechol 1,2-dioxygenase [EC:1.13.11.1] rbh
Intradiol ring-cleavage dioxygenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IWC2_METNO rbh
PcaH protein {ECO:0000313|EMBL:BAQ44542.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_cont_500_bf_scaffold_1182_20
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18678..19295
DNA (618bp) protein (206aa)
fumarylacetoacetate (FAA) hydrolase (EC:4.1.1.77); K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IWC1_METNO
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ44541.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_cont_500_bf_scaffold_1182_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20187..21767)
DNA (1581bp) protein (527aa)
Assimilatory nitrate reductase large subunit {ECO:0000313|EMBL:KFC64032.1}; EC=1.7.99.4 {ECO:0000313|EMBL:KFC64032.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sulfite reductase (EC:1.8.1.2); K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCT4_9BRAD
SCNpilot_cont_500_bf_scaffold_1182_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21764..23560)
DNA (1797bp) protein (599aa)
nirA; ferredoxin-nitrite reductase; K00366 ferredoxin-nitrite reductase [EC:1.7.7.1]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037BCE06 rbh
Precorrin-3B synthase {ECO:0000313|EMBL:KFC64033.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_1182_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23572..24300)
DNA (729bp) protein (243aa)
nitrate ABC transporter ATPases C and D; K15578 nitrate/nitrite transport system ATP-binding protein [EC:3.6.3.-]
Nitrate transport ATP-binding subunits C and D n=1 Tax=Rhizobium sp. CF142 RepID=J2B0N6_9RHIZ
Nitrate transport ATP-binding subunits C and D {ECO:0000313|EMBL:KFC64034.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_1182_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24351..25223)
DNA (873bp) protein (291aa)
Bicarbonate ABC transporter permease n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBL2_9RHIZ
Nitrate ABC transporter, permease {ECO:0000313|EMBL:KFC64035.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
nitrate ABC transporter inner membrane subunit; K15577 nitrate/nitrite transport system permease protein
SCNpilot_cont_500_bf_scaffold_1182_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25264..27945)
DNA (2682bp) protein (894aa)
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein {ECO:0000313|EMBL:KFC64036.1}; EC=1.7.1.1 {ECO:0000313|EMBL:KFC64036.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
molybdopterin oxidoreductase; K00372 nitrate reductase catalytic subunit [EC:1.7.99.4]
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZA0_RHOP2
SCNpilot_cont_500_bf_scaffold_1182_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27945..29159)
DNA (1215bp) protein (405aa)
Assimilatory nitrate reductase (NADH) beta subunit {ECO:0000313|EMBL:KFC64037.1}; EC=1.7.1.1 {ECO:0000313|EMBL:KFC64037.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4]
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SA97_9RHIZ
SCNpilot_cont_500_bf_scaffold_1182_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29162..30490)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037AE248 rbh
Nitrate/nitrite transport system substrate-binding protein {ECO:0000313|EMBL:KFC64038.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
nrtA; nitrate ABC transporter substrate-binding protein; K15576 nitrate/nitrite transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1182_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30789..31850)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037327EB
NitT/TauT family transport system ATP-binding protein {ECO:0000313|EMBL:KFC64039.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
nitrate transporter component, NrtA
SCNpilot_cont_500_bf_scaffold_1182_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31847..32431)
DNA (585bp) protein (195aa)
Response regulator receiver and ANTAR domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A312_STAND
Putative two-component response regulator:antitermination factor NasT {ECO:0000313|EMBL:KFC64040.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
response regulator receiver and ANTAR domain-containing protein; K07183 response regulator NasT
SCNpilot_cont_500_bf_scaffold_1182_30

Not on your lists

32530..32904
DNA (375bp) protein (125aa)
Putative transposase-related protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DFY7_9RHIZ
transposase; K07497 putative transposase
Uncharacterized protein {ECO:0000313|EMBL:KKK88284.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying items 1-30 of 92 in total

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