ggKbase home page

SCNpilot_cont_500_bf_scaffold_1328

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1328_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..506)
DNA (504bp) protein (168aa)
chemotaxis protein CheY n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003012056
Transcriptional regulatory protein {ECO:0000313|EMBL:KFC66737.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
winged helix family two component transcriptional regulator; K13584 two-component system, cell cycle response regulator CtrA
SCNpilot_cont_500_bf_scaffold_1328_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

851..2197
DNA (1347bp) protein (449aa)
fliI; flagellum-specific ATP synthase; K02412 flagellum-specific ATP synthase [EC:3.6.3.14] rbh
ATP synthase n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036F25DA rbh
Flagellar protein export ATPase FliI {ECO:0000313|EMBL:KFC66738.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_1328_3
unknown

Not on your lists

2242..2358
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1328_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2395..3630)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003705D4A
Putative Major Facilitator Superfamily (MFS) transporter {ECO:0000313|EMBL:KFC66739.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
major facilitator superfamily protein
SCNpilot_cont_500_bf_scaffold_1328_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3856..4260
DNA (405bp) protein (135aa)
Flagellar export protein FliJ n=5 Tax=Methylobacterium extorquens RepID=A9W0X1_METEP
Flagellar export protein FliJ {ECO:0000313|EMBL:KFC66740.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1328_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4342..4995)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQT3_9PROT
Acetyltransferase (GNAT) family protein {ECO:0000313|EMBL:KFC66741.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
N-acetyltransferase GCN5
SCNpilot_cont_500_bf_scaffold_1328_7
unknown

Not on your lists

5027..5425
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1328_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5517..5894
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BKI5_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KFC66742.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1328_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6039..7076
DNA (1038bp) protein (346aa)
membrane protein n=1 Tax=Methylocystis parvus RepID=UPI000315F7AC rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC66743.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1328_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7081..7983)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IQ83_METNO
Putative permeases of the drug/metabolite transporter (DMT) superfamily protein {ECO:0000313|EMBL:KFC66744.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1328_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8068..10197)
DNA (2130bp) protein (710aa)
flagellar biosynthesis protein FlhA n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035E9062 rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:KFC66746.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA rbh
SCNpilot_cont_500_bf_scaffold_1328_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10484..11932
DNA (1449bp) protein (483aa)
Putative sugar transport protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LE79_9RHOB rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:KFC66748.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
major facilitator transporter
SCNpilot_cont_500_bf_scaffold_1328_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12078..12392
DNA (315bp) protein (105aa)
Expressed protein n=1 Tax=Trichoplax adhaerens RepID=B3RTJ6_TRIAD
Uncharacterized protein {ECO:0000313|EMBL:KFC66749.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
expressed protein
SCNpilot_cont_500_bf_scaffold_1328_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12406..13773)
DNA (1368bp) protein (456aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UIX1_METS4 rbh
Response regulator {ECO:0000313|EMBL:KFC66750.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
two component sigma-54 specific Fis family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_1328_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13818..14168)
DNA (351bp) protein (117aa)
Flagellar motor switch protein FliN n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IU27_METNO
Flagellar motor switch protein FliN {ECO:0000313|EMBL:KFC66751.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flagellar motor switch protein FliN; K02417 flagellar motor switch protein FliN/FliY
SCNpilot_cont_500_bf_scaffold_1328_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14180..14770)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI000365CFFC
Flagellar assembly protein H {ECO:0000313|EMBL:KFC66752.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
fliH; flagellar assembly protein H; K02411 flagellar assembly protein FliH
SCNpilot_cont_500_bf_scaffold_1328_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14772..15851)
DNA (1080bp) protein (360aa)
Flagellar motor switch protein FliG n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SH79_9BRAD
Flagellar motor switch protein FliG {ECO:0000256|PIRNR:PIRNR003161}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flagellar motor switch protein FliG
SCNpilot_cont_500_bf_scaffold_1328_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15866..17560)
DNA (1695bp) protein (565aa)
flagellar M-ring protein FliF n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034DE52A rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF rbh
SCNpilot_cont_500_bf_scaffold_1328_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17761..18036)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UIX0_METS4
Uncharacterized protein {ECO:0000313|EMBL:KFC66758.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1328_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18144..18806)
DNA (663bp) protein (221aa)
flagellar hook capping protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035C0AEB
Flagellar basal-body rod modification protein FlgD {ECO:0000313|EMBL:KFC66759.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flagellar hook capping protein; K02389 flagellar basal-body rod modification protein FlgD
SCNpilot_cont_500_bf_scaffold_1328_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18822..20345)
DNA (1524bp) protein (508aa)
Flagellar hook-length control protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LV14_METRJ
Flagellar hook-length control protein {ECO:0000313|EMBL:KFC66760.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flagellar hook-length control protein
SCNpilot_cont_500_bf_scaffold_1328_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20570..21754
DNA (1185bp) protein (395aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E89AB4 rbh
SCNpilot_cont_500_bf_scaffold_1328_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21795..22436
DNA (642bp) protein (214aa)
Putative phosphatidylethanolamine-N-methyltransferase (PmtA-like) {ECO:0000313|EMBL:KFC66762.1}; EC=2.1.1.- {ECO:0000313|EMBL:KFC66762.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphatidylethanolamine N-methyltransferase; K00551 phosphatidylethanolamine N-methyltransferase [EC:2.1.1.17]
Phosphatidylethanolamine N-methyltransferase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICB8_XANP2
SCNpilot_cont_500_bf_scaffold_1328_trna_1
unknown

Not on your lists

22541..22614
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1328_24
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22738..22950
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NPG0_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ75225.1}; TaxID=1282361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC402.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1328_25
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23120..24223)
DNA (1104bp) protein (368aa)
Membrane protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LAQ4_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:EIZ81629.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1328_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24897..26780)
DNA (1884bp) protein (628aa)
phosphoglucomutase (EC:5.4.2.2); K01835 phosphoglucomutase [EC:5.4.2.2]
Phosphoglucomutase, alpha-D-glucose phosphate-specific n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q132H5_RHOPS
Phosphoglucomutase, alpha-D-glucose phosphate-specific {ECO:0000313|EMBL:ABE41014.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_1328_27
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26914..27792)
DNA (879bp) protein (293aa)
rfbA; Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24) rbh
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706, ECO:0000313|EMBL:CDI11477.1}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706, ECO:0000313|EMBL:CDI11477.1};; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QGJ3_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_1328_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27798..29324)
DNA (1527bp) protein (509aa)
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] rbh
Putative mannose-1-phosphate guanylyltransferase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YK66_MOBAS rbh
GDP-mannose 1-phosphate guanylyltransferase {ECO:0000313|EMBL:KFC73861.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_1328_29
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29364..30803)
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003625EBF rbh
Uncharacterized protein {ECO:0000313|EMBL:KHJ54167.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
putative bacterial sugar transferase family protein
Displaying items 1-30 of 31 in total

View Taxonomy