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SCNpilot_cont_500_bf_scaffold_2200

Search features with annotation key words

Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2200_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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165..1262
DNA (1098bp) protein (366aa)
Probable transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLH7_9PROT rbh
Probable transmembrane protein {ECO:0000313|EMBL:CCU63797.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
permease YjgP/YjgQ rbh
SCNpilot_cont_500_bf_scaffold_2200_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1414..3138)
DNA (1725bp) protein (575aa)
Phospholipid-lipopolysaccharide ABC transporter n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM55_9PROT rbh
Phospholipid-lipopolysaccharide ABC transporter {ECO:0000313|EMBL:CCU63798.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ABC transporter-like protein; K06148 ATP-binding cassette, subfamily C, bacterial rbh
SCNpilot_cont_500_bf_scaffold_2200_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3679..4176)
DNA (498bp) protein (166aa)
Membrane protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEK5_9RHIZ
hypothetical protein
Membrane protein {ECO:0000313|EMBL:AHB48389.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_cont_500_bf_scaffold_2200_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4255..4482)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9U3_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74478.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_2200_5
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4830..5750
DNA (921bp) protein (307aa)
Probable DNA repair protein Nmul_A1176 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9U2_NITMU rbh
hypothetical protein; K10979 DNA end-binding protein Ku rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_2200_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5765..6196
DNA (432bp) protein (144aa)
ligD; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9U1_NITMU
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module {ECO:0000313|EMBL:ABB74480.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_2200_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6138..8255
DNA (2118bp) protein (706aa)
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:CCU62204.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CCU62204.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ligD; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
ATP-dependent DNA ligase clustered with Ku protein, LigD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI13_9PROT rbh
SCNpilot_cont_500_bf_scaffold_2200_8
unknown

Not on your lists

8436..8771
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2200_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9378..9890)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI16_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62209.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Polyketide cyclase/dehydrase
SCNpilot_cont_500_bf_scaffold_2200_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10080..12008)
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI49_9PROT rbh
AsmA {ECO:0000313|EMBL:KIO48880.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
AsmA; K07290 hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2200_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12294..13019)
DNA (726bp) protein (242aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9T6_NITMU rbh
Crp/FNR family transcriptional regulator rbh
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ABB74485.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_2200_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13511..22300
DNA (8790bp) protein (2930aa)
Cyclic beta-1,2-glucan synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG70_9PROT rbh
Cyclic beta-1,2-glucan synthase {ECO:0000313|EMBL:CCU62216.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glycosyltransferase 36 rbh
SCNpilot_cont_500_bf_scaffold_2200_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22351..22848)
DNA (498bp) protein (166aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI53_9PROT
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KIO48877.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CRP/FNR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2200_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23245..23562
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG4_9PROT
Membrane protein {ECO:0000313|EMBL:KIO48982.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2200_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23621..24673
DNA (1053bp) protein (351aa)
Lipolytic enzyme, G-D-S-L n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9T2_NITMU rbh
lipolytic protein rbh
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:ABB74489.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_2200_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24735..25058
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DS66_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62220.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
Displaying 16 items

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