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SCNpilot_cont_500_bf_scaffold_1114

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1114_1
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..412)
DNA (411bp) protein (137aa)
Phage-like protein tail component-like protein n=1 Tax=Ralstonia sp. PBA RepID=I9KTK4_9RALS
Phage-like protein tail component-like protein {ECO:0000313|EMBL:EIZ03590.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
SCNpilot_cont_500_bf_scaffold_1114_2
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(388..765)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W577_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ03589.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
SCNpilot_cont_500_bf_scaffold_1114_3
unknown

Not on your lists

comp(766..1449)
DNA (684bp) protein (228aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1114_4
unknown

Not on your lists

comp(2000..2212)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1114_5
unknown

Not on your lists

comp(2223..2399)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1114_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2561..2932)
DNA (372bp) protein (124aa)
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_500_bf_scaffold_1114_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2936..3442)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJG5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62638.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_500_bf_scaffold_1114_8
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3439..5010)
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GJC7_NITSI rbh
hypothetical protein rbh
Tax=GWA2_Gallionellales_55_18_curated
SCNpilot_cont_500_bf_scaffold_1114_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5007..5282)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTD2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62640.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1114_10
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5224..5649)
DNA (426bp) protein (142aa)
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_cont_500_bf_scaffold_1114_11
unknown

Not on your lists

comp(5646..5999)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1114_12
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5986..6438)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZHI7_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ27333.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
SCNpilot_cont_500_bf_scaffold_1114_13
unknown

Not on your lists

comp(6431..6718)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1114_14
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7456..7677)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003740690
Uncharacterized protein {ECO:0000313|EMBL:AKI00555.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1114_15
unknown

Not on your lists

comp(7779..8378)
DNA (600bp) protein (200aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1114_16
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8375..9661)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035F32ED rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:AKI00558.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
Phage integrase rbh
SCNpilot_cont_500_bf_scaffold_1114_17
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9941..10420
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PGM5_9BURK rbh
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ELX10762.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
3-demethylubiquinone-9 3-methyltransferase
SCNpilot_cont_500_bf_scaffold_1114_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10855..13278
DNA (2424bp) protein (808aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPY5_9PROT rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU61515.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_cont_500_bf_scaffold_1114_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13341..15239)
DNA (1899bp) protein (633aa)
Probable potassium transport system protein kup n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA4_9PROT rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
K+ potassium transporter; K03549 KUP system potassium uptake protein rbh
SCNpilot_cont_500_bf_scaffold_1114_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15407..15865)
DNA (459bp) protein (153aa)
phosphohistidine phosphatase SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
Phosphohistidine phosphatase SixA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ5_9PROT
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:CCU61512.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_500_bf_scaffold_1114_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16093..16332)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF68_9PROT
Thioredoxin {ECO:0000313|EMBL:KIO48021.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1114_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16517..17371)
DNA (855bp) protein (285aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPY0_9PROT rbh
SCNpilot_cont_500_bf_scaffold_1114_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17739..18104
DNA (366bp) protein (122aa)
UPF0102 protein EBAPG3_5290 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGV2_9PROT
UPF0102 protein SQ11_13940 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K07460 putative endonuclease
SCNpilot_cont_500_bf_scaffold_1114_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18157..18744
DNA (588bp) protein (196aa)
21 kDa hemolysin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ0_9PROT
Transporter {ECO:0000313|EMBL:KIO48017.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
transport-associated protein
SCNpilot_cont_500_bf_scaffold_1114_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18757..20124
DNA (1368bp) protein (456aa)
D-lactate dehydrogenase (cytochrome) (EC:1.1.2.4); K03777 D-lactate dehydrogenase [EC:1.1.1.28] rbh
Fe-S protein, homolog of lactate dehydrogenase SO1521 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF67_9PROT rbh
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:KIO48016.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_500_bf_scaffold_1114_26
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20198..21124)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00035F2832
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL15926.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCNpilot_cont_500_bf_scaffold_1114_27
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21502..23139
DNA (1638bp) protein (546aa)
Phosphatase-related protein n=3 Tax=Amycolatopsis mediterranei RepID=D8HQ97_AMYMU rbh
phosphatase-like protein rbh
Phosphatase-related protein {ECO:0000313|EMBL:AEK46498.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_500_bf_scaffold_1114_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23321..24019)
DNA (699bp) protein (233aa)
Adenosylhopane nucleosidase, HpnG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMJ4_9PROT rbh
Phosphorylase {ECO:0000313|EMBL:KIO49694.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
purine phosphorylase family protein 1
SCNpilot_cont_500_bf_scaffold_1114_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24016..25956)
DNA (1941bp) protein (647aa)
Squalene--hopene cyclase {ECO:0000313|EMBL:CCU64002.1}; EC=5.4.99.17 {ECO:0000313|EMBL:CCU64002.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
squalene cyclase; K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129] rbh
Squalene--hopene cyclase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLZ3_9PROT rbh
SCNpilot_cont_500_bf_scaffold_1114_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26065..26823)
DNA (759bp) protein (253aa)
Surface lipoprotein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXM4_9PROT rbh
Membrane protein {ECO:0000313|EMBL:KIO49695.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
VacJ-like lipoprotein; K04754 lipoprotein rbh
Displaying items 1-30 of 43 in total

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