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SCNpilot_cont_500_bf_scaffold_3107

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3107_1
unknown

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3..77
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3107_trna_1
unknown

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167..239
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_3107_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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404..751
DNA (348bp) protein (116aa)
Protein translocase subunit SecE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHT0_9PROT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
SCNpilot_cont_500_bf_scaffold_3107_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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751..1284
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHH2_9PROT rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG rbh
SCNpilot_cont_500_bf_scaffold_3107_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1385..1816
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL11_NITMU
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_cont_500_bf_scaffold_3107_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1819..2511
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR80_9PROT rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
SCNpilot_cont_500_bf_scaffold_3107_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2971..3495
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL10_NITMU
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_3107_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3560..3940
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHG8_9PROT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_cont_500_bf_scaffold_3107_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4111..8184
DNA (4074bp) protein (1358aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFH7_9PROT rbh
SCNpilot_cont_500_bf_scaffold_3107_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8295..12524
DNA (4230bp) protein (1410aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000256|RuleBase:RU004279};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta' n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR75_9PROT rbh
SCNpilot_cont_500_bf_scaffold_3107_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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12812..14224
DNA (1413bp) protein (471aa)
Aminotransferase {ECO:0000313|EMBL:ABB74068.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABB74068.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Aminotransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB03_NITMU rbh
class III aminotransferase rbh
SCNpilot_cont_500_bf_scaffold_3107_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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14548..14925
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS12_NITMU
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
SCNpilot_cont_500_bf_scaffold_3107_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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14999..15469
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS7_NITMU rbh
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 rbh
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_3107_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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15576..17666
DNA (2091bp) protein (697aa)
Elongation factor G n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHB0_9PROT rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000313|EMBL:KIO47920.1}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
fusA; elongation factor G; K02355 elongation factor G rbh
SCNpilot_cont_500_bf_scaffold_3107_14
unknown

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17691..17759
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 15 items

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