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SCNpilot_cont_500_bf_scaffold_3123

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3123_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..785)
DNA (783bp) protein (261aa)
Phosphoserine phosphatase {ECO:0000313|EMBL:CCU62358.1}; EC=3.1.3.3 {ECO:0000313|EMBL:CCU62358.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
phosphoserine phosphatase SerB (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3] rbh
Phosphoserine phosphatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR4_9PROT rbh
SCNpilot_cont_500_bf_scaffold_3123_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1156..2424
DNA (1269bp) protein (423aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteri
Phosphoribosylglycinamide formyltransferase 2; K08289 phosphoribosylglycinamide formyltransferase 2 [EC:2.1.2.2] rbh
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIE8_9PROT rbh
SCNpilot_cont_500_bf_scaffold_3123_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2502..3395
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGI2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62356.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3123_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3406..5055)
DNA (1650bp) protein (550aa)
Diguanylate cyclase (GGDEF domain) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSI9_9PROT rbh
Diguanylate cyclase (GGDEF domain) {ECO:0000313|EMBL:CCU62355.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
diguanylate cyclase rbh
SCNpilot_cont_500_bf_scaffold_3123_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5202..8672)
DNA (3471bp) protein (1157aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair-coupling factor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR1_9PROT rbh
SCNpilot_cont_500_bf_scaffold_3123_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8833..10614)
DNA (1782bp) protein (594aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] rbh
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGH7_9PROT rbh
Single-stranded DNA exonuclease {ECO:0000313|EMBL:KIO50252.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_500_bf_scaffold_3123_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10921..11298
DNA (378bp) protein (126aa)
Ethidium bromide-methyl viologen resistance protein EmrE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIA1_9PROT
Ethidium bromide-methyl viologen resistance protein EmrE {ECO:0000313|EMBL:CCU62349.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
small multidrug resistance protein; K03297 small multidrug resistance protein, SMR family
SCNpilot_cont_500_bf_scaffold_3123_8
unknown

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11491..12642
DNA (1152bp) protein (384aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3123_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12880..13296)
DNA (417bp) protein (139aa)
GTP cyclohydrolase I; K09457 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818}; EC=1.7.1.13 {ECO:0000255|HAMAP-Rule:MF_00818};; 7-cyano-7-carbaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000255|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000255|HAMAP-Rule:MF_00818}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 1184
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=QUEF_NITMU
SCNpilot_cont_500_bf_scaffold_3123_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13329..16958
DNA (3630bp) protein (1210aa)
Chromosome partition protein Smc n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEY2_9PROT rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
chromosome segregation protein SMC; K03529 chromosome segregation protein rbh
SCNpilot_cont_500_bf_scaffold_3123_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16972..17373
DNA (402bp) protein (134aa)
Cell division protein ZipA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DNN8_9PROT
Cell division protein ZipA {ECO:0000256|RuleBase:RU003612}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ZipA, C-terminal FtsZ-binding region
SCNpilot_cont_500_bf_scaffold_3123_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17403..18215
DNA (813bp) protein (271aa)
Cell division protein ZipA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBB8_NITMU rbh
ZipA, C-terminal FtsZ-binding region rbh
Cell division protein ZipA {ECO:0000256|RuleBase:RU003612}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_500_bf_scaffold_3123_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18216..20288
DNA (2073bp) protein (691aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] rbh
DNA ligase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG8_9PROT rbh
SCNpilot_cont_500_bf_scaffold_3123_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20471..20776
DNA (306bp) protein (102aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFW9_9PROT
SCNpilot_cont_500_bf_scaffold_3123_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20829..21287
DNA (459bp) protein (153aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFW9_9PROT
SCNpilot_cont_500_bf_scaffold_3123_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21535..22083
DNA (549bp) protein (183aa)
hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine-guanine phosphoribosyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFM8_9PROT
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KIO50244.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_500_bf_scaffold_3123_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22159..22905
DNA (747bp) protein (249aa)
Probable 6-oxopurine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01963};; Purine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
5'-methylthioadenosine phosphorylase (EC:2.4.2.1); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] rbh
Probable 6-oxopurine nucleoside phosphorylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEY1_9PROT rbh
SCNpilot_cont_500_bf_scaffold_3123_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22895..23428
DNA (534bp) protein (178aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DNN3_9PROT
SCNpilot_cont_500_bf_scaffold_3123_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23457..23993)
DNA (537bp) protein (179aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:KIO50505.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG6_9PROT
SCNpilot_cont_500_bf_scaffold_3123_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24294..24620)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO50241.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_500_bf_scaffold_3123_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24961..25329)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEY0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO50239.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3123_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25351..25761)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBA8_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO50238.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
Displaying 22 items

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