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SCNpilot_cont_500_bf_scaffold_2237

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2237_1
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1723)
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZGM6_METPB
Uncharacterized protein {ECO:0000313|EMBL:KER34633.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2237_2
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1744..1887)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0G3C8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98165.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_cont_500_bf_scaffold_2237_3
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2411..3547)
DNA (1137bp) protein (379aa)
Aminoglycoside phosphotransferase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQT6_METTR rbh
Uncharacterized protein {ECO:0000313|EMBL:KHD33327.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2237_4

Not on your lists

comp(3826..5169)
DNA (1344bp) protein (448aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQT5_METTR rbh
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:EKD96565.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2237_5
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5166..5549)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQT4_METTR
Uncharacterized protein {ECO:0000313|EMBL:GAJ37428.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
SCNpilot_cont_500_bf_scaffold_2237_6
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5549..6271)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQT3_METTR rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI96871.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_500_bf_scaffold_2237_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6355..9492)
DNA (3138bp) protein (1046aa)
putative ATP-dependent DNA helicase (EC:3.6.1.-)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
UvrD/REP helicase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQT2_METTR rbh
SCNpilot_cont_500_bf_scaffold_2237_8
Acinetobacter sp. CIP 70.18, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9687..10262)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQT1_METTR
Uncharacterized protein {ECO:0000313|EMBL:ENX62449.1}; TaxID=1217700 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. CIP 70.18.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2237_9
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10259..11062)
DNA (804bp) protein (268aa)
Response regulator receiver protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQT0_METTR rbh
response regulator receiver
Response regulator receiver protein {ECO:0000313|EMBL:ACT58373.1}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418).;"
SCNpilot_cont_500_bf_scaffold_2237_10
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11095..12423)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=G2IU33_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EXS68220.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2237_11
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12605..14503)
DNA (1899bp) protein (633aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=G2IU33_9SPHN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM68972.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_cont_500_bf_scaffold_2237_12
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14507..15991)
DNA (1485bp) protein (495aa)
Putative hydrolase n=2 Tax=Sphingobium RepID=G2IU32_9SPHN rbh
Metallophosphoesterase {ECO:0000313|EMBL:EXS68219.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
putative hydrolase rbh
SCNpilot_cont_500_bf_scaffold_2237_13
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16341..16964)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QLC8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EPX80557.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
SCNpilot_cont_500_bf_scaffold_2237_14
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17041..19113
DNA (2073bp) protein (691aa)
Hypothetical membrane spanning protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BSX6_GRABC rbh
hypothetical protein rbh
Hypothetical membrane spanning protein {ECO:0000313|EMBL:ABI62076.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_2237_15
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19106..20872
DNA (1767bp) protein (589aa)
DNA helicase II (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
DNA helicase II {ECO:0000313|EMBL:ABI62077.1}; EC=3.6.1.- {ECO:0000313|EMBL:ABI62077.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
DNA helicase II n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BSX5_GRABC rbh
SCNpilot_cont_500_bf_scaffold_2237_16
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21079..22191)
DNA (1113bp) protein (371aa)
Transcriptional regulator n=1 Tax=Herbaspirillum sp. CF444 RepID=J3D8H2_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL86771.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
nitrogen assimilation transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2237_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

22367..24214
DNA (1848bp) protein (616aa)
X-Pro dipeptidyl-peptidase domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5R9_SPHTD rbh
X-Pro dipeptidyl-peptidase domain-containing protein; K06978 rbh
X-Pro dipeptidyl-peptidase domain protein {ECO:0000313|EMBL:ACZ39471.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_cont_500_bf_scaffold_2237_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24261..25208
DNA (948bp) protein (316aa)
ABC transporter permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003757AC3 rbh
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components {ECO:0000313|EMBL:GAD24079.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_2237_19
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25205..26068
DNA (864bp) protein (288aa)
Dipeptide transport system permease protein dppC n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TH95_TISMK rbh
dppC; Dipeptide transport system permease protein dppC rbh
Dipeptide transport system permease protein dppC {ECO:0000313|EMBL:AFK52133.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_2237_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26070..27047
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037B0F8C
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAL93526.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_cont_500_bf_scaffold_2237_21
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27044..28018
DNA (975bp) protein (325aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QBV9_9BRAD rbh
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EJN10343.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2237_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28064..29551
DNA (1488bp) protein (496aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKM7_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG69982.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
dipeptide-binding protein of ABC transporter; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_2237_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(29705..31276)
DNA (1572bp) protein (524aa)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=2476385 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_cont_500_bf_scaffold_2237_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31281..32357)
DNA (1077bp) protein (359aa)
Putative dioxygenase, 2OG-Fe(II) oxygenase superfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMT8_9PROT
2OG-Fe(II) oxygenase; K06892
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2237_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32393..33193)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037A0DF2
oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_500_bf_scaffold_2237_26
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33244..34014
DNA (771bp) protein (257aa)
IclR family transcriptional regulator n=1 Tax=Ralstonia sp. AU12-08 RepID=S9S6Z6_9RALS
IclR family transcriptional regulator {ECO:0000313|EMBL:KHK54757.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
IclR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2237_27
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34026..34988)
DNA (963bp) protein (321aa)
Putative exported protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QGQ6_BORBO rbh
hypothetical protein rbh
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:KCV66603.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_cont_500_bf_scaffold_2237_28
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34985..35803)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036773C1 rbh
hydrolase
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:KCV66600.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
Displaying 28 items

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