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SCNpilot_cont_500_bf_scaffold_2633

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2633_1
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..454)
DNA (453bp) protein (151aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.77); K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VZG8_9RHIZ
2-oxo-hepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EJZ22775.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_cont_500_bf_scaffold_2633_2
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

617..763
DNA (147bp) protein (49aa)
Cytochrome c Hsc n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ID61_BEII9
cytochrome c Hsc
Cytochrome c Hsc {ECO:0000313|EMBL:ACB96826.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_500_bf_scaffold_2633_3
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(760..1656)
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=Q2T3A4_BURTA rbh
transcriptional regulator rbh
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:AIP26095.1}; Transcriptional regulator {ECO:0000313|EMBL:ABC35165.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
SCNpilot_cont_500_bf_scaffold_2633_4
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1781..2680
DNA (900bp) protein (300aa)
zinc-containing alcohol dehydrogenase superfamily protein (EC:1.6.5.5); K00344 NADPH2:quinone reductase [EC:1.6.5.5] rbh
Zinc-containing alcohol dehydrogenase superfamily n=1 Tax=Burkholderia sp. (strain 383) RepID=Q394N2_BURS3 rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KDP89080.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCNpilot_cont_500_bf_scaffold_2633_5
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(2777..3205)
DNA (429bp) protein (143aa)
Ion transport 2 domain protein n=2 Tax=Sinorhizobium medicae RepID=A6UL65_SINMW
Uncharacterized protein {ECO:0000313|EMBL:KGM44258.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
Ion transport 2 domain-containing protein
SCNpilot_cont_500_bf_scaffold_2633_6
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3205..4371)
DNA (1167bp) protein (389aa)
Butyryl-CoA dehydrogenase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TSV6_TISMK rbh
mmgC; Butyryl-CoA dehydrogenase rbh
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AFK55844.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_2633_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4433..5398
DNA (966bp) protein (322aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IYS0_9BURK rbh
h16_A0563; extra-cytoplasmic solute receptor rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_2633_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5579..6196)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00030139EA
Uncharacterized protein {ECO:0000313|EMBL:KFL26669.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2633_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(6246..6794)
DNA (549bp) protein (183aa)
cupin id=4319704 bin=GWA2_Methylomirabilis_73_35 species=Sphingomonas elodea genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cupin
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_cont_500_bf_scaffold_2633_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6828..7529)
DNA (702bp) protein (234aa)
amino acid ABC transporter ATPase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B78240
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EIM28845.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
branched-chain amino acid transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2633_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7529..9322)
DNA (1794bp) protein (598aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345EF10 rbh
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SCNpilot_cont_500_bf_scaffold_2633_12
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9319..10185)
DNA (867bp) protein (289aa)
ABC transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034DE84F
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:KCB45616.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
leucine/isoleucine/valine ABC transporter; permease component (LivH-like); K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_2633_13
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10196..11329)
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000348399F
braC; branched chain amino acid ABC transporter periplasmic ligand-binding protein
Branched chain amino acid ABC transporter periplasmic ligand-binding protein {ECO:0000313|EMBL:AFK55697.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_2633_14
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11484..12182
DNA (699bp) protein (233aa)
Transcriptional regulator, TetR family n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BNN3_DELAS
TetR family transcriptional regulator {ECO:0000313|EMBL:AIJ44779.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
TetR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2633_15
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12179..13579
DNA (1401bp) protein (467aa)
Amidohydrolase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TN08_TISMK rbh
amidohydrolase rbh
Amidohydrolase {ECO:0000313|EMBL:AFK54146.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_2633_16
bacterium YEK0313, Bacteria

Not on your lists

13633..14796
DNA (1164bp) protein (388aa)
methionine synthase II (cobalamin-independent)-like protein; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2FTE3_9GAMM rbh
2-hydroxypropyl-CoM lyase {ECO:0000313|EMBL:CEJ13104.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_2633_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15010..15561)
DNA (552bp) protein (184aa)
glucose-methanol-choline oxidoreductase; K00108 choline dehydrogenase [EC:1.1.99.1]
Oxidoreductase, GMC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMA1_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 17 items

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