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SCNpilot_cont_500_bf_scaffold_1207

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1207_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..258
DNA (258bp) protein (86aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Beggiatoa alba B18LD RepID=I3CDX3_9GAMM
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255..2195
DNA (1941bp) protein (647aa)
AMP-dependent synthetase and ligase id=1829174 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fadD3; AMP-dependent synthetase and ligase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2205..3101
DNA (897bp) protein (299aa)
Putative uncharacterized protein id=1829176 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anoxybacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ABC transporter integral membrane subunit; K01997 branched-chain amino acid transport system permease protein
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_cont_500_bf_scaffold_1207_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3105..4172
DNA (1068bp) protein (356aa)
ABC-type branched-chain amino acid transport system, permease component id=1829178 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4208..5458
DNA (1251bp) protein (417aa)
ABC-type branched-chain amino acid transport system, periplasmic component id=1829180 bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5503..6297
DNA (795bp) protein (265aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=1829182 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
livF3; branched-chain amino acid ABC transporter ATP-binding proteim
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6394..7053)
DNA (660bp) protein (220aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU04_PARL1
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS63387.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_1207_8

Not on your lists

7562..8221
DNA (660bp) protein (220aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AXH3_9ZZZZ
Transposase IS204/IS1001/IS1096/IS1165 family protein {ECO:0000313|EMBL:EQD62177.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
tnp-7; transposase
SCNpilot_cont_500_bf_scaffold_1207_9
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

8320..10110
DNA (1791bp) protein (597aa)
Transposase IS4 family protein n=1 Tax=uncultured bacterium RepID=K2DRL2_9BACT rbh
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
SCNpilot_cont_500_bf_scaffold_1207_10
RHI_Planctomycetes_42_15, Planctomycetes, Bacteria

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10094..10549
DNA (456bp) protein (152aa)
Similar to transposase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1V7_9BACT
transposase, IS204/IS1001/IS1096/IS1165 family protein
Tax=RIFCSPHIGHO2_12_Planctomycetes_42_15_curated
SCNpilot_cont_500_bf_scaffold_1207_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10872..12029
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003750DFF rbh
Uncharacterized protein {ECO:0000313|EMBL:ETW98117.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase
SCNpilot_cont_500_bf_scaffold_1207_12
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12191..13345
DNA (1155bp) protein (385aa)
acdC3; acyl-CoA dehydrogenase 3 (EC:1.3.99.3)
Acyl-CoA dehydrogenase 3 {ECO:0000313|EMBL:ADP19966.1}; EC=1.3.8.- {ECO:0000313|EMBL:ADP19966.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Acyl-CoA dehydrogenase 3 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HY12_ACHXA
SCNpilot_cont_500_bf_scaffold_1207_13
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13420..14505
DNA (1086bp) protein (362aa)
adhI; alcohol dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
PREDICTED: alcohol dehydrogenase class-3-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18E91
Alcohol dehydrogenase {ECO:0000313|EMBL:KJK25309.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_cont_500_bf_scaffold_1207_14
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14568..15419)
DNA (852bp) protein (284aa)
Hydrolase, alpha/beta hydrolase fold family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5G6_ERYLH
alpha/beta hydrolase fold family hydrolase
Hydrolase, alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:ABC65075.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_cont_500_bf_scaffold_1207_15
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15517..16092)
DNA (576bp) protein (192aa)
Carboxymuconolactone decarboxylase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9M5_CAUSK
carboxymuconolactone decarboxylase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_500_bf_scaffold_1207_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16420..17649)
DNA (1230bp) protein (410aa)
Xanthine phosphoribosyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HPC8_9BRAD rbh
Xanthine phosphoribosyltransferase {ECO:0000313|EMBL:ERF86633.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_500_bf_scaffold_1207_17
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17665..17880)
DNA (216bp) protein (72aa)
Probable ferredoxin n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GC16_9BRAD
ferredoxin; K05337 ferredoxin
Probable ferredoxin {ECO:0000313|EMBL:BAL78303.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_500_bf_scaffold_1207_18
uncultured Rhizobiales bacterium HF4000_48A13, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18518..19276
DNA (759bp) protein (253aa)
short-chain dehydrogenase/reductase SDR; K07535 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
Short-chain dehydrogenase/reductase SDR n=2 Tax=Rhizobiales RepID=A7HU05_PARL1
8 dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:ADI19690.1}; TaxID=710781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; environmental samples.;" source="uncultured Rhizobiales bacterium HF4000_48A13.;"
SCNpilot_cont_500_bf_scaffold_1207_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19281..20072
DNA (792bp) protein (264aa)
naphthoate synthase; K07536 2-ketocyclohexanecarboxyl-CoA hydrolase [EC:3.1.2.-]
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Naphthoate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU06_PARL1
SCNpilot_cont_500_bf_scaffold_1207_20
uncultured Rhizobiales bacterium HF4000_48A13, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20083..21237
DNA (1155bp) protein (385aa)
acyl-CoA dehydrogenase domain-containing protein; K04117 cyclohexanecarboxyl-CoA dehydrogenase [EC:1.3.99.-]
Acyl-CoA dehydrogenases n=1 Tax=uncultured Rhizobiales bacterium HF4000_48A13 RepID=E0XZ51_9RHIZ
Acyl-CoA dehydrogenases {ECO:0000313|EMBL:ADI19692.1}; TaxID=710781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; environmental samples.;" source="uncultured Rhizobiales bacterium HF4000_48A13.;"
SCNpilot_cont_500_bf_scaffold_1207_21
uncultured Rhizobiales bacterium HF4000_48A13, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21251..22033
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=uncultured Rhizobiales bacterium HF4000_48A13 RepID=E0XZ52_9RHIZ
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:ADI19693.1}; TaxID=710781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; environmental samples.;" source="uncultured Rhizobiales bacterium HF4000_48A13.;"
SCNpilot_cont_500_bf_scaffold_1207_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22074..23276
DNA (1203bp) protein (401aa)
Rieske (2Fe-2S) domain protein n=2 Tax=Rhizobiales RepID=A7HU09_PARL1
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABS63392.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_1207_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23345..24283
DNA (939bp) protein (313aa)
Amidohydrolase 2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU30_PARL1
amidohydrolase 2
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24252..24419
DNA (168bp) protein (56aa)
Amidohydrolase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HRK1_9SPHN
amidohydrolase 2
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_25
uncultured Chromatiales bacterium HF0200_41F04, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24493..25632
DNA (1140bp) protein (380aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases n=1 Tax=uncultured Chromatiales bacterium HF0200_41F04 RepID=E0XV27_9GAMM rbh
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases {ECO:0000313|EMBL:ADI18268.1}; TaxID=710740 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; environmental samples.;" source="uncultured Chromatiales bacterium HF0200_41F04.;"
luciferase-like protein rbh
SCNpilot_cont_500_bf_scaffold_1207_26

Not on your lists

25658..26530
DNA (873bp) protein (291aa)
Feruloyl-CoA synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IUL9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KKN87801.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_500_bf_scaffold_1207_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26583..27782
DNA (1200bp) protein (400aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q143V2_BURXL
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27839..29020
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000380DC9B
hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29020..29472
DNA (453bp) protein (151aa)
Nucleic-acid-binding protein containing a Zn-ribbon-like protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V7R6_SPHWW
nucleic-acid-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1207_30
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29504..30136
DNA (633bp) protein (211aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU37_PARL1
alcohol dehydrogenase
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ABS63420.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 30 items

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