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SCNpilot_cont_500_bf_scaffold_1241

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1241_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1034
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI000374333E
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1283..2029)
DNA (747bp) protein (249aa)
Putative glycerophosphoryl diester phosphodiesterase n=1 Tax=Variovorax paradoxus B4 RepID=T1XE75_VARPD
Uncharacterized protein {ECO:0000313|EMBL:BAR60939.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
putative glycerophosphoryl diester phosphodiesterase
SCNpilot_cont_500_bf_scaffold_1241_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2049..2969)
DNA (921bp) protein (307aa)
glycerol-3-phosphate transporter membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A3946 rbh
Putative binding protein-protein-dependent transport system inner membrane component protein {ECO:0000313|EMBL:KGJ69254.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
binding-protein-dependent transport systems inner membrane component; K05815 sn-glycerol 3-phosphate transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1241_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2985..3986)
DNA (1002bp) protein (334aa)
Permease component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXW1_9RHIZ rbh
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:EIM28803.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
sn-glycerol-3-phosphate ABC transporter permease; K05814 sn-glycerol 3-phosphate transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1241_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3970..5298)
DNA (1329bp) protein (443aa)
Extracellular solute-binding protein family 1 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVW2_VARPS rbh
Variovorax paradoxus strain MEDvA23 contig_63, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26005.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter periplasmic protein; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1241_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5314..6576)
DNA (1263bp) protein (421aa)
Putative glycerol-1-phosphate dehydrogenase n=1 Tax=Variovorax paradoxus B4 RepID=T1XFE1_VARPD rbh
putative glycerol-1-phosphate dehydrogenase rbh
Putative glycerol-1-phosphate dehydrogenase {ECO:0000313|EMBL:AGU51231.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_1241_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6619..7575
DNA (957bp) protein (319aa)
Putative transcriptional regulator, DeoR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XE80_VARPD rbh
DeoR family transcriptional regulator rbh
Putative transcriptional regulator, DeoR family {ECO:0000313|EMBL:AGU51232.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_1241_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7580..9031
DNA (1452bp) protein (484aa)
xylulokinase; K00854 xylulokinase [EC:2.7.1.17]
Xylulokinase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y6S9_LEPCP
Uncharacterized protein {ECO:0000313|EMBL:AHY52657.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_500_bf_scaffold_1241_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9028..9684)
DNA (657bp) protein (219aa)
glutathione S-transferase domain-containing protein; K04097 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZE9_STAND rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9766..10956
DNA (1191bp) protein (397aa)
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZE8_STAND rbh
polyhydroxyalkanoate depolymerase rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10996..13071
DNA (2076bp) protein (692aa)
Methylmalonyl-CoA mutase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0M6_9PROT
mutB1; adenosylcobalamin-dependent methylmalonyl-CoA mutase large subunit (MCM-alpha)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13124..13999)
DNA (876bp) protein (292aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14105..15973
DNA (1869bp) protein (623aa)
ATP-binding cassette subfamily B n=1 Tax=Oceanibaculum indicum P24 RepID=K2JZ19_9PROT
ABC transporter; fused ATPase and permease components
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15960..17126
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TVW3_9PROT
major facilitator transporter
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17142..18140
DNA (999bp) protein (333aa)
argK; arginine/ornithine transport system ATPase (EC:2.7.-.-); K07588 LAO/AO transport system kinase [EC:2.7.-.-]
Lao n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVY8_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18130..18615
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035D5DB9
hypothetical protein; K09160 hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18689..18994
DNA (306bp) protein (102aa)
50S ribosomal protein L28 n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUB1_9PROT
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19083..20099)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMX7_RHOCS
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20117..22066)
DNA (1950bp) protein (650aa)
cobalt chelatase large subunit (EC:6.6.1.2); K09883 cobaltochelatase CobT [EC:6.6.1.2]
Cobalt chelatase large subunit n=1 Tax=Oceanibaculum indicum P24 RepID=K2KHY6_9PROT rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22135..23139)
DNA (1005bp) protein (335aa)
cobaltochelatase, CobS subunit (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2] rbh
Cobaltochelatase, CobS subunit n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVW9_RHOCS rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23252..23833)
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0IZ94_ACIMA
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23881..24171
DNA (291bp) protein (97aa)
BolA family protein n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RM67_ASTEC
bola family protein; K05527 BolA protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24242..24931)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AI46_AZOBR
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24970..26277)
DNA (1308bp) protein (436aa)
Mg2+ and Co2+ transporter CorB n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0Y4_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26288..27415)
DNA (1128bp) protein (376aa)
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KHZ3_9PROT rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27412..28020)
DNA (609bp) protein (203aa)
aroK; shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K217_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28433..30043
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TKA0_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30040..31041
DNA (1002bp) protein (334aa)
Tyrosine recombinase XerC n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z2Y3_9PROT rbh
site-specific recombinase XerD; K04763 integrase/recombinase XerD rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31076..32029
DNA (954bp) protein (318aa)
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=ACCA_RHOCS rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1241_30
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32035..33051
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI0003145D13 rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying items 1-30 of 39 in total

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