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SCNpilot_cont_500_bf_scaffold_1436

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1436_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..765
DNA (765bp) protein (255aa)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=2476385 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_cont_500_bf_scaffold_1436_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

865..2460
DNA (1596bp) protein (532aa)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=2476385 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_cont_500_bf_scaffold_1436_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2570..3511
DNA (942bp) protein (314aa)
Oligopeptide ABC transporter, permease protein id=4153831 bin=GWC2_Methylomirabilis_70_16 species=Ruegeria pomeroyi genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
oligopeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3508..4443
DNA (936bp) protein (312aa)
Oligopeptide ABC transporter, permease protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQG7_9PROT rbh
oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4443..6077
DNA (1635bp) protein (545aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JTA7_9PROT rbh
ABC transporter family protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_6
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6161..7750)
DNA (1590bp) protein (530aa)
monooxygenase (EC:1.14.13.22); K03379 cyclohexanone monooxygenase [EC:1.14.13.22]
FAD dependent oxidoreductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIS7_9PROT rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EDP66560.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_cont_500_bf_scaffold_1436_7
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7866..9179
DNA (1314bp) protein (438aa)
FAD dependent oxidoreductase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G987_RHIML
Oxidoreductase {ECO:0000313|EMBL:CDX40689.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
oxidoreductase
SCNpilot_cont_500_bf_scaffold_1436_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9399..11741
DNA (2343bp) protein (781aa)
Carbon-monoxide dehydrogenase large subunit n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALR4_AZOBR
coxL2; carbon-monoxide dehydrogenase large subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11738..12331
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. BT03 RepID=J3B140_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12405..13661
DNA (1257bp) protein (419aa)
hemolysin secretion protein D n=1 Tax=Xanthobacteraceae RepID=UPI00035D6818 rbh
RND family efflux transporter MFP subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13680..17003
DNA (3324bp) protein (1108aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EN87_METSB
hydrophobe/amphiphile efflux-1 (HAE1) family transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17009..18016
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036DA40C
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18055..19584
DNA (1530bp) protein (510aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1436_14
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19646..20476)
DNA (831bp) protein (277aa)
Short-chain dehydrogenase/reductase SDR n=3 Tax=Amycolatopsis mediterranei RepID=D8I8Z8_AMYMU rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEK44367.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_500_bf_scaffold_1436_15
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20493..20759)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTD1_GRABC
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KJC52673.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein; K09959 hypothetical protein
SCNpilot_cont_500_bf_scaffold_1436_16
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20890..22410)
DNA (1521bp) protein (507aa)
aldA; chloroacetaldehyde dehydrogenase (EC:1.2.1.22) rbh
Aldehyde dehydrogenase, chloroacetaldehyde dehydrogenase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIP0_HYPSM rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJC52672.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_500_bf_scaffold_1436_17
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22500..23903)
DNA (1404bp) protein (468aa)
aldehyde dehydrogenase family protein (EC:1.2.1.-); K00155 [EC:1.2.1.-]
Putative aldehyde dehydrogenase family protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EIC7_BRASB
Bradyrhizobium elkanii strain UASWS1015 Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49293.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_1436_18
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24034..24852)
DNA (819bp) protein (273aa)
Molybdate transport system substrate-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P6H7_AZOS1
modA; molybdate transport system substrate-binding protein
Molybdate transport system substrate-binding protein {ECO:0000313|EMBL:BAI76256.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_500_bf_scaffold_1436_19
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24852..25802)
DNA (951bp) protein (317aa)
Aldo/keto reductase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAY9_ANADF rbh
Putative aldo/keto reductase {ECO:0000313|EMBL:GAO38661.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
aldo/keto reductase rbh
SCNpilot_cont_500_bf_scaffold_1436_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25920..26648
DNA (729bp) protein (243aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037AE4CE
SCNpilot_cont_500_bf_scaffold_1436_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26659..27147)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U781_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN86098.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein; K07170 GAF domain-containing protein
SCNpilot_cont_500_bf_scaffold_1436_22
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(27172..28149)
DNA (978bp) protein (326aa)
Oxidoreductase, aldo/keto reductase family n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9U3_ACIC5
oxidoreductase, aldo/keto reductase family
Oxidoreductase, aldo/keto reductase family {ECO:0000313|EMBL:ACO33924.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
SCNpilot_cont_500_bf_scaffold_1436_23
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28163..28573)
DNA (411bp) protein (137aa)
4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Carboxymuconolactone decarboxylase n=1 Tax=Burkholderia sp. H160 RepID=B5WH31_9BURK
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EEA02282.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_cont_500_bf_scaffold_1436_24
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28929..29786)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D3F4_BRAJP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL07014.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_500_bf_scaffold_1436_25
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30136..30966
DNA (831bp) protein (277aa)
Transcriptional regulator, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R373_9RHOB
AraC family transcriptional regulator
Transcriptional regulator, putative {ECO:0000313|EMBL:EEA94534.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
SCNpilot_cont_500_bf_scaffold_1436_trna_1
unknown

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comp(31102..31175)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1436_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31392..32168
DNA (777bp) protein (259aa)
enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003495D04 rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:KIZ47299.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
enoyl-CoA hydratase/isomerase
SCNpilot_cont_500_bf_scaffold_1436_27
unknown

Not on your lists

comp(32228..32932)
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1436_28
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33032..35923)
DNA (2892bp) protein (964aa)
Putative protease n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I456_AZOC5 rbh
protease rbh
Putative protease {ECO:0000313|EMBL:BAF87690.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_1436_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36028..36966)
DNA (939bp) protein (313aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PL17_9BRAD
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:KFC66827.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
Displaying items 1-30 of 64 in total

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