ggKbase home page

SCNpilot_cont_500_bf_scaffold_1709

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1709_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..184
DNA (183bp) protein (61aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Burkholderia cepacia GG4 RepID=J7J357_BURCE
5-carboxymethyl-2-hydroxymuconate delta-isomerase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_2
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(216..932)
DNA (717bp) protein (239aa)
PREDICTED: uncharacterized protein YIR042C-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1825A rbh
GNAT family acetyltransferase
Acetyltransferase, gnat family {ECO:0000313|EMBL:ADZ69639.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_1709_3
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1003..2508
DNA (1506bp) protein (502aa)
Putative transcriptional regulatory protein,GntR family, with a PLP-dependent aminotransferase domain putative signal peptide n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ATZ6_AZOBR rbh
Transcriptional regulator {ECO:0000313|EMBL:AIB15128.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative transcriptional regulatory protein,GntR family, with a PLP-dependent aminotransferase domain; putative signal peptide rbh
SCNpilot_cont_500_bf_scaffold_1709_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2513..3160)
DNA (648bp) protein (216aa)
Transcriptional regulator, TetR family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F272_CONWI
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3174..4235)
DNA (1062bp) protein (354aa)
Carboxylesterase Est2 n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E1W7_9MICO
alpha/beta hydrolase fold-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4300..5586
DNA (1287bp) protein (429aa)
adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1] rbh
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000374C53A rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5571..6047
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JT38_AGRVS
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_8
unknown

Not on your lists

6145..6498
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1709_9
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6514..7422)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q2U5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM78552.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1709_10
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

7568..8242
DNA (675bp) protein (225aa)
transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI000362291C
two-component response regulator
Winged helix family two component transcriptional regulator {ECO:0000313|EMBL:KJR40811.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
SCNpilot_cont_500_bf_scaffold_1709_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8239..9579
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00038036F9
histidine kinase
SCNpilot_cont_500_bf_scaffold_1709_12
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9697..10842
DNA (1146bp) protein (382aa)
ceramide glucosyltransferase; K00720 ceramide glucosyltransferase [EC:2.4.1.80]
Ceramide glucosyltransferase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMY1_METNO
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ43541.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_cont_500_bf_scaffold_1709_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11200..11649)
DNA (450bp) protein (150aa)
glyoxalase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031AA067
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11696..12430)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5W6M9_BURSC rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12444..13298)
DNA (855bp) protein (285aa)
Transglutaminase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XLF1_SORCE rbh
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43428.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
transglutaminase rbh
SCNpilot_cont_500_bf_scaffold_1709_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13295..13726)
DNA (432bp) protein (144aa)
Uncharacterized protein n=2 Tax=Afipia RepID=K8PED1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41012.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Activator of Hsp90 ATPase 1 family protein
SCNpilot_cont_500_bf_scaffold_1709_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14352..15341)
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XY66_9PROT
hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15536..16435
DNA (900bp) protein (300aa)
Coenzyme PQQ synthesis protein B n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZWM7_9SPHN
Coenzyme PQQ synthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653, ECO:0000256|SAAS:SAAS00055095}; Pyrroloquinoline quinone biosynthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
pyrroloquinoline quinone biosynthesis protein PqqB; K06136 pyrroloquinoline quinone biosynthesis protein B
SCNpilot_cont_500_bf_scaffold_1709_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16432..17184
DNA (753bp) protein (251aa)
Pyrroloquinoline-quinone synthase {ECO:0000256|HAMAP-Rule:MF_00654}; EC=1.3.3.11 {ECO:0000256|HAMAP-Rule:MF_00654};; Coenzyme PQQ synthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; Pyrroloquinoline quinone biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
pqqC; coenzyme Pyrrolo-quinoline quinone (PQQ) synthesis protein C PqqC; K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11] rbh
Pyrroloquinoline-quinone synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A4U8_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_1709_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17187..17483
DNA (297bp) protein (99aa)
coenzyme PQQ biosynthesis protein D n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B641DD
Coenzyme PQQ biosynthesis protein D {ECO:0000313|EMBL:EWY37707.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
pqqD; pyrroloquinoline quinone biosynthesis protein PqqD
SCNpilot_cont_500_bf_scaffold_1709_21
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17480..18577
DNA (1098bp) protein (366aa)
Coenzyme PQQ synthesis protein E n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=PQQE_GRABC rbh
pyrroloquinoline quinone biosynthesis protein PqqE; K06139 pyrroloquinoline quinone biosynthesis protein E rbh
Coenzyme PQQ synthesis protein E {ECO:0000255|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000255|HAMAP-Rule:MF_00660}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_1709_22
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18807..19784)
DNA (978bp) protein (326aa)
Quinone oxidoreductase n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HV95_9GAMM rbh
Quinone oxidoreductase {ECO:0000313|EMBL:ERS13051.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. PN-3.;"
quinone oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_1709_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19900..21168)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003734879
major facilitator transporter
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21180..21824)
DNA (645bp) protein (215aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H875_9BRAD
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21892..24087)
DNA (2196bp) protein (732aa)
Amylo-alpha-1,6-glucosidase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212D3_RHOPB
Amylo-alpha-1,6-glucosidase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_1709_26
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24168..24878)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037F2ECA
DNA-binding protein {ECO:0000313|EMBL:KEA60867.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
XRE family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1709_27
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25181..26590
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
isopropylmalate isomerase n=1 Tax=Elioraea tepidiphila RepID=UPI00037C6E6D
SCNpilot_cont_500_bf_scaffold_1709_28
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

26607..27230
DNA (624bp) protein (208aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000256|SAAS:SAAS00089872};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
3-isopropylmalate dehydratase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
isopropylmalate isomerase n=1 Tax=Methylocystis parvus RepID=UPI0002E78030
SCNpilot_cont_500_bf_scaffold_1709_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27490..28542
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCG1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS38429.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K01989 putative ABC transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1709_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28742..30478
DNA (1737bp) protein (579aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F4C94A rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS38430.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
adenylate/guanylate cyclase with integral membrane sensor rbh
Displaying items 1-30 of 33 in total

View Taxonomy