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SCNpilot_cont_500_bf_scaffold_3528

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3528_1
unknown

Not on your lists

47..451
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3528_2

Not on your lists

comp(503..1324)
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=G3CRD8_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:AEM45121.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
dienelactone hydrolase
SCNpilot_cont_500_bf_scaffold_3528_3
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1488..1976
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKE6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM24438.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative transmembrane protein
SCNpilot_cont_500_bf_scaffold_3528_4
bacterium YEK0313, Bacteria

Not on your lists

comp(2040..2981)
DNA (942bp) protein (314aa)
UPI0003CF9EDC related cluster n=1 Tax=unknown RepID=UPI0003CF9EDC
HTH-type transcriptional regulator CdhR {ECO:0000313|EMBL:CEJ15874.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
AraC type helix-turn-helix-domain containing protein
SCNpilot_cont_500_bf_scaffold_3528_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3116..4276
DNA (1161bp) protein (387aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWK6_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:KGD96984.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_3528_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4273..5535
DNA (1263bp) protein (421aa)
UPI0003CF9F3F related cluster n=1 Tax=unknown RepID=UPI0003CF9F3F rbh
Salicylate 1-monooxygenase {ECO:0000313|EMBL:KGD96983.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
FAD dependent oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_3528_7
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5618..6949
DNA (1332bp) protein (444aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] rbh
Amidohydrolase n=1 Tax=Caulobacter crescentus OR37 RepID=R0EHH6_CAUCE rbh
Amidohydrolase {ECO:0000313|EMBL:ENZ80667.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
SCNpilot_cont_500_bf_scaffold_3528_8
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6964..7758
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI0002FE9B0A
alpha/beta hydrolase fold protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
SCNpilot_cont_500_bf_scaffold_3528_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7781..8707)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MSJ6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF20357.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3528_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8896..9576)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHX5_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_3528_11
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9596..10129)
DNA (534bp) protein (178aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036488BF
SCNpilot_cont_500_bf_scaffold_3528_12
unknown

Not on your lists

10478..10960
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3528_13
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10914..12227)
DNA (1314bp) protein (438aa)
Branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHS1_9RHIZ
AceF protein {ECO:0000313|EMBL:BAQ46882.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
branched-chain alpha-keto acid dehydrogenase subunit E2
SCNpilot_cont_500_bf_scaffold_3528_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12229..13242)
DNA (1014bp) protein (338aa)
2-oxoisovalerate dehydrogenase subunit beta; K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4]
UPI0003CF6ED3 related cluster n=1 Tax=unknown RepID=UPI0003CF6ED3
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_3528_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13246..14463)
DNA (1218bp) protein (406aa)
2-oxoisovalerate dehydrogenase subunit alpha; K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4]
UPI0003CFC5C0 related cluster n=1 Tax=unknown RepID=UPI0003CFC5C0
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_3528_16
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14649..15080
DNA (432bp) protein (144aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YLG7_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:EHR02619.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_3528_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15244..16017
DNA (774bp) protein (258aa)
mvrA; ferredoxin NADP+ reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
Ferredoxin--NADP(+) reductase n=2 Tax=Bradyrhizobiaceae RepID=F7QKQ2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42588.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_500_bf_scaffold_3528_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16045..17706)
DNA (1662bp) protein (554aa)
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49] rbh
urocanate hydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E39001 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_3528_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17703..19262)
DNA (1560bp) protein (520aa)
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Histidine ammonia-lyase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AA51_STAND
SCNpilot_cont_500_bf_scaffold_3528_20
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19259..20482)
DNA (1224bp) protein (408aa)
imidazolonepropionase; K01468 imidazolonepropionase [EC:3.5.2.7] rbh
Imidazolonepropionase {ECO:0000255|HAMAP-Rule:MF_00372}; EC=3.5.2.7 {ECO:0000255|HAMAP-Rule:MF_00372};; Imidazolone-5-propionate hydrolase {ECO:0000255|HAMAP-Rule:MF_00372}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
imidazolonepropionase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036FF85C rbh
SCNpilot_cont_500_bf_scaffold_3528_21
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20489..21613
DNA (1125bp) protein (375aa)
N-formimino-L-glutamate deiminase n=1 Tax=Sphingobium baderi LL03 RepID=T0HNM4_9SPHN
N-formimino-L-glutamate deiminase {ECO:0000313|EMBL:EQA99158.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
formiminoglutamate deiminase
Displaying 21 items

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