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SCNpilot_cont_500_bf_scaffold_2330

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2330_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..714
DNA (714bp) protein (238aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] rbh
D-beta-hydroxybutyrate dehydrogenase n=2 Tax=Delftia acidovorans RepID=S2X6W8_DELAC rbh
D-beta-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EPD40917.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_cont_500_bf_scaffold_2330_2
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(788..1534)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WZ47_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:KEH15106.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2330_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1846..2577
DNA (732bp) protein (244aa)
Two component transcriptional regulator, winged helix family n=5 Tax=cellular organisms RepID=A9BVX7_DELAS rbh
ompR; osmolarity response regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR rbh
Two-component system, OmpR family, phosphate regulon response regulator OmpR {ECO:0000313|EMBL:EPD44735.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_cont_500_bf_scaffold_2330_4
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2820..4322
DNA (1503bp) protein (501aa)
integral membrane sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
Histidine kinase n=4 Tax=Delftia RepID=A9BVX6_DELAS rbh
SCNpilot_cont_500_bf_scaffold_2330_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4425..4904)
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] rbh
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=4 Tax=Delftia RepID=A9BVX5_DELAS rbh
SCNpilot_cont_500_bf_scaffold_2330_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4921..5751)
DNA (831bp) protein (277aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] rbh
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BVX4_DELAS rbh
SCNpilot_cont_500_bf_scaffold_2330_7
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5913..9407
DNA (3495bp) protein (1165aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair-coupling factor n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WZ42_DELAC rbh
SCNpilot_cont_500_bf_scaffold_2330_8
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9424..10089
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0002E29DE6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD44730.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2330_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10225..10938
DNA (714bp) protein (238aa)
phosphoserine phosphatase SerB (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3] rbh
Phosphoserine phosphatase SerB n=2 Tax=Delftia acidovorans RepID=S2WS49_DELAC rbh
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:EPD44729.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_cont_500_bf_scaffold_2330_10
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11047..11295)
DNA (249bp) protein (83aa)
Resolvase domain protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AV85_DELSC
resolvase domain-containing protein
Resolvase domain protein {ECO:0000313|EMBL:AEF90889.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_cont_500_bf_scaffold_2330_11
unknown

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comp(12359..12559)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2330_12
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13234..14292)
DNA (1059bp) protein (353aa)
Zonular occludens toxin n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AV87_DELSC rbh
Zonular occludens toxin; K10954 zona occludens toxin rbh
Zonular occludens toxin {ECO:0000313|EMBL:AEF90891.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
Displaying 12 items

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