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SCNpilot_cont_500_bf_scaffold_6200

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6200_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..239
DNA (237bp) protein (79aa)
ABC transporter permease n=1 Tax=Chryseobacterium taeanense RepID=UPI00031182F9
Glycine betaine/proline transport system permease {ECO:0000313|EMBL:EPD44632.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
ABC transporter permease; K02001 glycine betaine/proline transport system permease protein
SCNpilot_cont_500_bf_scaffold_6200_2
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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350..1339
DNA (990bp) protein (330aa)
Glycine betaine/proline transport system substrate-binding protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WP03_DELAC rbh
Glycine/betaine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEH10818.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
proX; glycine betaine transporter periplasmic subunit; K02002 glycine betaine/proline transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_6200_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1384..3042)
DNA (1659bp) protein (553aa)
PTS system fructose subfamily transporter subunit IIC; K02769 PTS system, fructose-specific IIB component [EC:2.7.1.69]; K02770 PTS system, fructose-specific IIC component rbh
PTS system, fructose-specific IIC component n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X779_DELAC rbh
PTS system, fructose-specific IIC component {ECO:0000313|EMBL:EPD41032.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_cont_500_bf_scaffold_6200_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3066..4031)
DNA (966bp) protein (322aa)
1-phosphofructokinase (EC:2.7.1.56); K00882 1-phosphofructokinase [EC:2.7.1.56] rbh
Phosphofructokinase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9C1W7_DELAS rbh
Phosphofructokinase {ECO:0000256|PIRNR:PIRNR000535}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_cont_500_bf_scaffold_6200_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4028..6571)
DNA (2544bp) protein (848aa)
phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9); K02768 PTS system, fructose-specific IIA component [EC:2.7.1.69]; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]; K11183 phosphocarrier protein FPr rbh
PTS fructose transporter subunit IIA n=1 Tax=Chryseobacterium taeanense RepID=UPI0003691967 rbh
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:EPD41034.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_cont_500_bf_scaffold_6200_6
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6707..7693
DNA (987bp) protein (329aa)
LacI family transcriptional regulator (EC:5.1.1.1); K03435 LacI family transcriptional regulator, fructose operon transcriptional repressor rbh
LacI family transcription regulator n=1 Tax=Chryseobacterium taeanense RepID=UPI0002DF4397 rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KEH15025.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_cont_500_bf_scaffold_6200_7
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7765..8451
DNA (687bp) protein (229aa)
Chemotaxis protein CheX n=2 Tax=Delftia acidovorans RepID=S2WP09_DELAC rbh
Chemotaxis protein CheX {ECO:0000313|EMBL:EPD44626.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_6200_8
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8568..9077
DNA (510bp) protein (170aa)
MarR family transcriptional regulator, transcriptional regulator for hemolysin n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X784_DELAC rbh
MarR family transcriptional regulator, transcriptional regulator for hemolysin {ECO:0000313|EMBL:EPD41037.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin rbh
SCNpilot_cont_500_bf_scaffold_6200_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9079..10305
DNA (1227bp) protein (409aa)
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WMR9_DELAC rbh
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein {ECO:0000313|EMBL:EPD41038.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
SCNpilot_cont_500_bf_scaffold_6200_10
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10420..11259
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XNF1_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD41039.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_6200_11
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11324..12316)
DNA (993bp) protein (331aa)
class II fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
Fumarate hydratase class II n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AWD5_DELSC
SCNpilot_cont_500_bf_scaffold_6200_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12313..12648)
DNA (336bp) protein (112aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
fumC; fumarate hydratase; K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WSE0_DELAC
SCNpilot_cont_500_bf_scaffold_6200_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12962..14515
DNA (1554bp) protein (518aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01676 fumarate hydratase, class I [EC:4.2.1.2] rbh
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit n=3 Tax=Delftia RepID=F6AWD6_DELSC rbh
Fumarate hydratase, class I {ECO:0000313|EMBL:EPD41041.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_cont_500_bf_scaffold_6200_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14616..15248
DNA (633bp) protein (211aa)
type 11 methyltransferase n=1 Tax=Chryseobacterium taeanense RepID=UPI0002F56217 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD44620.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
type 11 methyltransferase rbh
SCNpilot_cont_500_bf_scaffold_6200_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15245..15832
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WMS4_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD41043.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
N-acetyltransferase GCN5 rbh
SCNpilot_cont_500_bf_scaffold_6200_16
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15891..16781
DNA (891bp) protein (297aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] rbh
Glutamate racemase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XNG0_DELAC rbh
SCNpilot_cont_500_bf_scaffold_6200_17
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16783..17265)
DNA (483bp) protein (161aa)
metal-dependent hydrolase n=1 Tax=Chryseobacterium taeanense RepID=UPI0002EBFC6B
Metal-dependent hydrolase {ECO:0000313|EMBL:KEH10810.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein; K07043
SCNpilot_cont_500_bf_scaffold_6200_18
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17298..17999)
DNA (702bp) protein (234aa)
Uncharacterized protein n=3 Tax=Delftia RepID=S2WP22_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD44616.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_6200_19
unknown

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18252..18440
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6200_trna_2
unknown

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comp(18256..18343)
DNA (88bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_6200_trna_1
unknown

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comp(18446..18518)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_6200_20
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18658..19422)
DNA (765bp) protein (255aa)
peptidase M48 Ste24p; K07387 putative metalloprotease [EC:3.4.24.-] rbh
Uncharacterized protein n=3 Tax=Bacteria RepID=S2W9H3_DELAC rbh
Peptidase M48 Ste24p {ECO:0000313|EMBL:EZP50319.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
Displaying 22 items

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