ggKbase home page

SCNpilot_cont_500_bf_scaffold_2894

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2894_1
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2..1480
DNA (1479bp) protein (493aa)
DNA mismatch repair protein MutS n=1 Tax=Spirosoma panaciterrae RepID=UPI0003778046
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_cont_500_bf_scaffold_2894_2
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1477..1950
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L719_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE52095.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_cont_500_bf_scaffold_2894_3
unknown

Not on your lists

1937..2146
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2894_4
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2220..2723
DNA (504bp) protein (168aa)
recombinase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036705A2 rbh
Rad52/22 double-strand break repair protein rbh
Rad52/22 double-strand break repair protein {ECO:0000313|EMBL:ADB36581.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_2894_5
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2804..5020)
DNA (2217bp) protein (739aa)
glutamate carboxypeptidase II (EC:3.4.17.21); K01301 glutamate carboxypeptidase II [EC:3.4.17.21] rbh
glutamate carboxypeptidase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037B3BC6 rbh
Glutamate carboxypeptidase {ECO:0000313|EMBL:AKD54536.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_500_bf_scaffold_2894_6
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5154..5876)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000361A734 rbh
Uncharacterized protein {ECO:0000313|EMBL:AKD54537.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2894_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6067..7467
DNA (1401bp) protein (467aa)
major facilitator transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI00037995B0 rbh
nucleoside:H symporter rbh
Nucleoside:H symporter {ECO:0000313|EMBL:ADB36584.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_2894_8
unknown

Not on your lists

7464..7685
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2894_9
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7700..8479
DNA (780bp) protein (260aa)
exodeoxyribonuclease III Xth (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
exodeoxyribonuclease III n=1 Tax=Spirosoma panaciterrae RepID=UPI00037F116C rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:AKD54540.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_500_bf_scaffold_2894_10
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8545..9123
DNA (579bp) protein (193aa)
pseudouridine synthase; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] rbh
pseudouridine synthase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036210C1 rbh
Pseudouridine synthase {ECO:0000313|EMBL:AKD54541.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_500_bf_scaffold_2894_11
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9168..9863)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037ADE2C rbh
DNA repair protein RadC; K03630 DNA repair protein RadC rbh
DNA repair protein RadC {ECO:0000313|EMBL:ADB36587.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_2894_12
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(10045..10221)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C6BC3
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
SCNpilot_cont_500_bf_scaffold_2894_13
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10416..10814)
DNA (399bp) protein (133aa)
stress protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036586E4
Stress protein {ECO:0000313|EMBL:AKD54544.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
stress responsive alpha-beta barrel domain-containing protein
SCNpilot_cont_500_bf_scaffold_2894_14
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10906..11931
DNA (1026bp) protein (342aa)
S1/P1 Nuclease n=1 Tax=Spirosoma panaciterrae RepID=UPI0003660F0D rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADB36590.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_2894_15
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11991..12860)
DNA (870bp) protein (290aa)
xylose isomerase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037200DC rbh
Xylose isomerase {ECO:0000313|EMBL:AKD54546.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
xylose isomerase rbh
SCNpilot_cont_500_bf_scaffold_2894_16
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12999..14192
DNA (1194bp) protein (398aa)
methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] rbh
SAM-dependent methyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037DEBB0 rbh
SAM-dependent methyltransferase {ECO:0000313|EMBL:AKD54547.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_500_bf_scaffold_2894_17
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14401..16218
DNA (1818bp) protein (606aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003617BFC rbh
SCNpilot_cont_500_bf_scaffold_2894_18
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16131..16475)
DNA (345bp) protein (115aa)
thioredoxin n=1 Tax=Spirosoma panaciterrae RepID=UPI0003688788
thioredoxin; K03671 thioredoxin 1
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
Displaying 18 items

View Taxonomy