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SCNpilot_cont_500_bf_scaffold_2038

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2038_1
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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207..2471
DNA (2265bp) protein (755aa)
Nitric-oxide reductase, quinol-dependent {ECO:0000313|EMBL:AJW29235.1}; EC=1.7.2.5 {ECO:0000313|EMBL:AJW29235.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
nitric-oxide reductase subunit B; K04561 nitric oxide reductase subunit B [EC:1.7.2.5] rbh
Nitric-oxide reductase subunit B n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RR47_ALLVD rbh
SCNpilot_cont_500_bf_scaffold_2038_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2858..3997
DNA (1140bp) protein (380aa)
PAS/PAC sensor signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS3_PARL1 rbh
SCNpilot_cont_500_bf_scaffold_2038_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3994..4605
DNA (612bp) protein (204aa)
Response regulator receiver protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS2_PARL1
response regulator receiver protein; K14987 two-component system, LuxR family, response regulator FixJ
Response regulator receiver protein {ECO:0000313|EMBL:ABS63655.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_2038_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5272..5952
DNA (681bp) protein (227aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS0_PARL1
CRP/FNR family transcriptional regulator; K15861 CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ABS63653.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_2038_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5958..6821
DNA (864bp) protein (288aa)
UspA domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR32_PARL1
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ABS62365.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_2038_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6831..7220
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AQD8_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCC99649.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_500_bf_scaffold_2038_7
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7217..7627
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y771_9BURK
Translational machinery protein {ECO:0000313|EMBL:KJC48803.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2038_8
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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7633..9192
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CED1_9GAMM
hypothetical protein rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_cont_500_bf_scaffold_2038_9
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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9250..9789
DNA (540bp) protein (180aa)
Twin-arginine translocation pathway signal n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AD47_NITEC
Uncharacterized protein {ECO:0000313|EMBL:GAM98525.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
twin-arginine translocation pathway signal
SCNpilot_cont_500_bf_scaffold_2038_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9900..11474
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JW41_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE78787.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein; K07028 rbh
SCNpilot_cont_500_bf_scaffold_2038_11
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11464..12327)
DNA (864bp) protein (288aa)
Putative universal stress protein UspA-like n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZI84_AZOL4
Universal stress protein UspA {ECO:0000313|EMBL:KJR62701.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative universal stress protein UspA-like
SCNpilot_cont_500_bf_scaffold_2038_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12526..13563
DNA (1038bp) protein (346aa)
Alcohol dehydrogenase GroES domain-containing protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9P7_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:KGE01616.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
alcohol dehydrogenase GroES domain-containing protein
SCNpilot_cont_500_bf_scaffold_2038_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13740..15002
DNA (1263bp) protein (421aa)
Mn2+/Fe2_transporter, NRAMP family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YML0_9RHIZ rbh
Mn2+/Fe2_transporter, NRAMP family {ECO:0000313|EMBL:EIM25202.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
manganese transport protein
SCNpilot_cont_500_bf_scaffold_2038_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15226..15759
DNA (534bp) protein (178aa)
Cytochrome B561 n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DP76_METS0
Strain MEJ076 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIP97665.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cytochrome b561; K12262 cytochrome b561
Displaying 14 items

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