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SCNpilot_cont_500_bf_scaffold_10089

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_10089_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(90..824)
DNA (735bp) protein (245aa)
thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Thymidylate synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7E1_STAND
SCNpilot_cont_500_bf_scaffold_10089_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(867..1136)
DNA (270bp) protein (90aa)
hypothetical protein id=14624419 bin=bin5_DeltaP species=Candidatus Glomeribacter gigasporarum genus=Candidatus Glomeribacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SCNpilot_cont_500_bf_scaffold_10089_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1114..1389)
DNA (276bp) protein (92aa)
Uncharacterized protein id=1323112 bin=GWE1_T_denit_62_9 species=Herbaspirillum sp. CF444 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_cont_500_bf_scaffold_10089_4
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1779..3050)
DNA (1272bp) protein (424aa)
Permease of the major facilitator superfamily n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGU4_PHEZH rbh
major facilitator superfamily permease rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_500_bf_scaffold_10089_5
CG_Desulfovib_01, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3089..4381)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7UVG1_9DELT rbh
major facilitator superfamily permease rbh
Tax=CG_Desulfovib_01
SCNpilot_cont_500_bf_scaffold_10089_6
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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4498..5607
DNA (1110bp) protein (370aa)
2,4-dienoyl-CoA reductase [NADPH] {ECO:0000313|EMBL:CDO61124.1}; EC=1.3.1.34 {ECO:0000313|EMBL:CDO61124.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG36_9BRAD rbh
NADH:flavin oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_10089_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5804..6364
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NVZ1_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:AIB12153.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
hypothetical protein; K09985 hypothetical protein
SCNpilot_cont_500_bf_scaffold_10089_8
unknown

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6418..6615
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_10089_9
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6612..7037
DNA (426bp) protein (142aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
Plasmid stability protein StbB n=1 Tax=Rhodobacter capsulatus YW2 RepID=V8HQ30_RHOCA
PilT protein-like protein; K07062
SCNpilot_cont_500_bf_scaffold_10089_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7034..7639
DNA (606bp) protein (202aa)
fumC; fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Fumarate hydratase class II n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8T4_9RHIZ
SCNpilot_cont_500_bf_scaffold_10089_11
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7639..8364
DNA (726bp) protein (242aa)
fumC; fumarate hydratase; K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Fumarate hydratase class II n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAV3_AZOC5
SCNpilot_cont_500_bf_scaffold_10089_12
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8525..9268
DNA (744bp) protein (248aa)
Spermidine synthase family protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y6H3_9RHIZ
Spermidine synthase family protein {ECO:0000313|EMBL:EHH12663.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
spermidine synthase family protein
SCNpilot_cont_500_bf_scaffold_10089_13
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9279..9452
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFD6_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG78706.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Displaying 13 items

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