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SCNpilot_cont_500_bf_scaffold_3593

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3593_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1175)
DNA (1173bp) protein (391aa)
sulfite reductase; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
Sulfite reductase (Ferredoxin) {ECO:0000313|EMBL:ABS62512.1}; EC=1.8.7.1 {ECO:0000313|EMBL:ABS62512.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Sulfite reductase (Ferredoxin) n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH9_PARL1
SCNpilot_cont_500_bf_scaffold_3593_2

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comp(1115..1441)
DNA (327bp) protein (109aa)
nitrite/sulfite reductase ferredoxin-like protein; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
sulfite reductase n=1 Tax=Aureimonas ureilytica RepID=UPI00036393AE
Uncharacterized protein {ECO:0000313|EMBL:KKN79386.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_500_bf_scaffold_3593_3
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1428..1790)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DIZ0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EJW22048.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3593_4
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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2080..2676
DNA (597bp) protein (199aa)
Tetracycline repressor protein class H n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3CB95_STRMB
Tetracycline repressor protein class H {ECO:0000313|EMBL:EMF01317.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
TetR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_3593_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2683..3468)
DNA (786bp) protein (262aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI1_PARL1 rbh
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS62514.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_3593_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3465..4214)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036C6EB9
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACE99030.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_500_bf_scaffold_3593_7
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

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comp(4266..4559)
DNA (294bp) protein (98aa)
GIY-YIG nuclease n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039F0BC5
Excinuclease ABC C subunit domain-containing protein {ECO:0000313|EMBL:KJJ85124.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
putative excinuclease ABC, C subunit; K07461 putative endonuclease
SCNpilot_cont_500_bf_scaffold_3593_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4605..5606)
DNA (1002bp) protein (334aa)
NMT1/THI5 like domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI3_PARL1 rbh
NMT1/THI5-like domain-containing protein {ECO:0000313|EMBL:GAK45139.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NMT1/THI5-like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_3593_9
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5738..6199
DNA (462bp) protein (154aa)
chemotaxis protein CheY n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039AC7F9
two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_500_bf_scaffold_3593_10
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6312..6881)
DNA (570bp) protein (190aa)
Hypothetical membrane protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K5U7_AZOSB
Uncharacterized protein {ECO:0000313|EMBL:KFB77465.1}; Flags: Precursor;; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3593_11
unknown

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comp(6943..7449)
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3593_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7512..8042)
DNA (531bp) protein (177aa)
Integral membrane protein-like protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI4_PARL1
integral membrane protein
Integral membrane protein-like protein {ECO:0000313|EMBL:ABS62517.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_3593_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8039..8605)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI5_PARL1
hypothetical protein
Conserved protein {ECO:0000313|EMBL:GAK45093.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_500_bf_scaffold_3593_14
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8670..10811)
DNA (2142bp) protein (714aa)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:ACA21023.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ACA21023.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Penicillin-binding protein, 1A family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UHQ3_METS4
1A family penicillin-binding protein
Displaying 14 items

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