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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_CONT_500_BF_Alphaproteobacteria_61_35
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 35.21 Longest contig: 78.11 Kbp Bin length: 1.72 Mbp GC content: 61.03 %
Contigs count: 368 Features count: 2052 rRNAs count: 0 tRNAs count: 18

Genome completeness

partial RP 33 / 55 MC: 1 BSCG 33 / 51 MC: 3 ASCG 8 / 38
Displaying items 201-250 of 368 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_22866
Class: Alphaproteobacteria (50%)
4 2419 bp 57.96 36.59 96.11
SCNpilot_cont_500_bf_scaffold_35895
Species: Rhodopseudomonas palustris (50%)
2 1706 bp 63.95 36.64 100.06
SCNpilot_cont_500_bf_scaffold_3830
Class: Alphaproteobacteria (75%)
8 10251 bp 61.91 36.80 95.32
SCNpilot_cont_500_bf_scaffold_20117
Class: Alphaproteobacteria (71.43%)
7 6385 bp 60.45 36.81 80.63
SCNpilot_cont_500_bf_scaffold_19837
Class: Alphaproteobacteria (70%)
10 9937 bp 61.74 36.91 75.96
SCNpilot_cont_500_bf_scaffold_41834
Species: Caulobacter vibrioides (50%)
2 1509 bp 63.88 36.94 98.41
SCNpilot_cont_500_bf_scaffold_6298
Order: Caulobacterales (50%)
6 6326 bp 63.23 36.95 94.61
SCNpilot_cont_500_bf_scaffold_7431
Class: Alphaproteobacteria (50%)
6 5556 bp 63.03 37.03 94.87
SCNpilot_cont_500_bf_scaffold_13485
Order: Rhizobiales (71.43%)
7 5401 bp 62.56 37.03 86.93
SCNpilot_cont_500_bf_scaffold_12365
Class: Alphaproteobacteria (66.67%)
6 5097 bp 63.98 37.03 100.06
SCNpilot_cont_500_bf_scaffold_37213
Class: Alphaproteobacteria (60%)
5 3414 bp 60.37 37.05 83.57
SCNpilot_cont_500_bf_scaffold_12218
Phylum: Proteobacteria (50%)
6 3847 bp 63.22 37.11 91.94
SCNpilot_cont_500_bf_scaffold_44353
Species: alpha proteobacterium MA2 (50%)
2 1440 bp 62.57 37.15 96.46
SCNpilot_cont_500_bf_scaffold_14218
Class: Alphaproteobacteria (75%)
4 3439 bp 61.53 37.15 95.26
SCNpilot_cont_500_bf_scaffold_49088
Species: Oceanibaculum indicum (50%)
2 1325 bp 61.66 37.17 84.00
SCNpilot_cont_500_bf_scaffold_17215
Species: Parvibaculum lavamentivorans (50%)
4 2986 bp 63.60 37.17 97.05
SCNpilot_cont_500_bf_scaffold_13336
Class: Alphaproteobacteria (75%)
12 9371 bp 61.04 37.22 87.65
SCNpilot_cont_500_bf_scaffold_6257
Class: Alphaproteobacteria (71.43%)
7 6365 bp 60.06 37.27 90.78
SCNpilot_cont_500_bf_scaffold_29238
Species: Candidatus Phaeomarinobacter ectocarpi (50%)
2 2008 bp 61.45 37.35 96.51
SCNpilot_cont_500_bf_scaffold_34623
Species: Rhodospirillum centenum (50%)
2 1759 bp 56.96 37.38 96.36
SCNpilot_cont_500_bf_scaffold_18170
Phylum: Proteobacteria (50%)
8 10435 bp 64.03 37.40 92.57
SCNpilot_cont_500_bf_scaffold_50130
Species: Sphingomonas sp. NS2 (75%)
4 1303 bp 62.93 37.41 99.92
SCNpilot_cont_500_bf_scaffold_10193
Order: Rhodospirillales (57.14%)
7 5967 bp 59.11 37.46 98.79
SCNpilot_cont_500_bf_scaffold_7577
Class: Alphaproteobacteria (83.33%)
6 5478 bp 59.36 37.47 92.94
SCNpilot_cont_500_bf_scaffold_9230
Species: Afipia felis (71.43%)
7 6325 bp 67.43 37.47 99.32
SCNpilot_cont_500_bf_scaffold_14619
Class: Alphaproteobacteria (50%)
4 3366 bp 64.47 37.51 87.52
SCNpilot_cont_500_bf_scaffold_58287
Species: Starkeya novella (50%)
2 1151 bp 65.16 37.58 90.96
SCNpilot_cont_500_bf_scaffold_10390
Class: Alphaproteobacteria (83.33%)
6 7759 bp 61.22 37.73 86.26
SCNpilot_cont_500_bf_scaffold_18678
Class: Alphaproteobacteria (100%)
3 2817 bp 65.25 37.81 90.73
SCNpilot_cont_500_bf_scaffold_19500
Class: Alphaproteobacteria (80%)
5 6505 bp 59.95 37.86 76.83
SCNpilot_cont_500_bf_scaffold_62294 3 1082 bp 63.49 37.89 100.37
SCNpilot_cont_500_bf_scaffold_56934
Species: Inquilinus limosus (50%)
2 1174 bp 60.56 37.90 73.85
SCNpilot_cont_500_bf_scaffold_7500
Species: Hyphomicrobium denitrificans (50%)
4 5526 bp 62.45 37.91 95.60
SCNpilot_cont_500_bf_scaffold_12930
Class: Alphaproteobacteria (66.67%)
9 6880 bp 59.38 37.94 80.15
SCNpilot_cont_500_bf_scaffold_34951
Species: Caulobacter sp. AP07 (50%)
2 1746 bp 62.83 37.94 92.10
SCNpilot_cont_500_bf_scaffold_12033
Class: Alphaproteobacteria (55.56%)
9 6135 bp 62.44 37.98 89.44
SCNpilot_cont_500_bf_scaffold_13380
Order: Rhizobiales (57.14%)
7 4857 bp 60.74 37.99 87.52
SCNpilot_cont_500_bf_scaffold_18656 5 2819 bp 60.16 38.05 83.65
SCNpilot_cont_500_bf_scaffold_16222
Class: Alphaproteobacteria (62.5%)
8 6030 bp 61.89 38.06 96.07
SCNpilot_cont_500_bf_scaffold_16688
Class: Alphaproteobacteria (66.67%)
3 3057 bp 63.13 38.11 95.68
SCNpilot_cont_500_bf_scaffold_28473
Species: alpha proteobacterium MA2 (60%)
5 3224 bp 60.86 38.15 87.00
SCNpilot_cont_500_bf_scaffold_62379
Species: alpha proteobacterium BAL199 (50%)
2 1081 bp 58.56 38.16 73.82
SCNpilot_cont_500_bf_scaffold_9510
Class: Alphaproteobacteria (71.43%)
7 6244 bp 60.92 38.24 77.83
SCNpilot_cont_500_bf_scaffold_35902
Species: Nitrospirillum amazonense (50%)
2 1706 bp 58.79 38.25 99.36
SCNpilot_cont_500_bf_scaffold_3943
Order: Rhizobiales (50%)
16 13310 bp 61.28 38.41 82.97
SCNpilot_cont_500_bf_scaffold_8287
Class: Alphaproteobacteria (57.14%)
7 6421 bp 60.18 38.43 90.03
SCNpilot_cont_500_bf_scaffold_29692
Species: Acetobacteraceae bacterium AT-5844 (50%)
2 1983 bp 60.72 38.45 98.34
SCNpilot_cont_500_bf_scaffold_54606
Species: Labrenzia alexandrii (50%)
2 1218 bp 65.93 38.59 96.06
SCNpilot_cont_500_bf_scaffold_7047
Order: Caulobacterales (57.14%)
7 6675 bp 60.46 38.65 81.66
SCNpilot_cont_500_bf_scaffold_22348
Phylum: Proteobacteria (100%)
5 3373 bp 63.92 38.69 91.79
Displaying items 201-250 of 368 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.