ggKbase | organisms

Consensus taxonomy: Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 35.21 Longest contig: 78.11 Kbp Bin length: 1.72 Mbp GC content: 61.03 %

Contigs count: 368 Features count: 2052 rRNAs count: 0 tRNAs count: 18

Genome completeness

partial RP 33 / 55 MC: 1 BSCG 33 / 51 MC: 3 ASCG 8 / 38

Displaying items 301-350 of 368 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_cont_500_bf_scaffold_55818 Species: Nitrospirillum amazonense (50%)	2	2161 bp	58.68	36.56	90.51
SCNpilot_cont_500_bf_scaffold_68463 Species: Parvibaculum lavamentivorans (50%)	2	1700 bp	60.82	24.56	91.94
SCNpilot_cont_500_bf_scaffold_63924 Species: Hyphomicrobium denitrificans (100%)	2	1055 bp	66.82	41.23	91.28
SCNpilot_cont_500_bf_scaffold_39659 Species: Polymorphum gilvum (50%)	2	1576 bp	62.18	46.95	99.56
SCNpilot_cont_500_bf_scaffold_27436 Species: Erythrobacter litoralis (100%)	2	2109 bp	58.70	40.66	92.89
SCNpilot_cont_500_bf_scaffold_30605 Species: Hyphomonadaceae bacterium BRH_c29 (50%)	2	1933 bp	58.92	31.82	82.41
SCNpilot_cont_500_bf_scaffold_39149 Species: Caulobacter segnis (50%)	2	1591 bp	60.03	34.41	89.00
SCNpilot_cont_500_bf_scaffold_62379 Species: alpha proteobacterium BAL199 (50%)	2	1081 bp	58.56	38.16	73.82
SCNpilot_cont_500_bf_scaffold_59989 Species: Magnetospirillum magneticum (50%)	2	1122 bp	61.50	29.86	100.00
SCNpilot_cont_500_bf_scaffold_49143 Species: Bradyrhizobium sp. LTSPM299 (50%)	2	1323 bp	61.75	41.95	93.88
SCNpilot_cont_500_bf_scaffold_33153 Species: alpha proteobacterium MA2 (50%)	2	1819 bp	61.41	43.84	95.66
SCNpilot_cont_500_bf_scaffold_53093 Species: Phyllobacterium sp. YR531 (50%)	2	1245 bp	62.57	30.32	94.70
SCNpilot_cont_500_bf_scaffold_56934 Species: Inquilinus limosus (50%)	2	1174 bp	60.56	37.90	73.85
SCNpilot_cont_500_bf_scaffold_29238 Species: Candidatus Phaeomarinobacter ectocarpi (50%)	2	2008 bp	61.45	37.35	96.51
SCNpilot_cont_500_bf_scaffold_40577 Species: Bradyrhizobium elkanii (50%)	2	1548 bp	65.25	45.22	99.81
SCNpilot_cont_500_bf_scaffold_60315 Species: Hyphomonas sp. BRH_c22 (50%)	2	1116 bp	61.56	21.28	91.40
SCNpilot_cont_500_bf_scaffold_37572 Species: alpha proteobacterium MA2 (50%)	2	1646 bp	62.03	31.90	99.88
SCNpilot_cont_500_bf_scaffold_63459 Species: Phaeospirillum molischianum (50%)	2	1063 bp	61.24	26.58	90.87
SCNpilot_cont_500_bf_scaffold_54606 Species: Labrenzia alexandrii (50%)	2	1218 bp	65.93	38.59	96.06
SCNpilot_cont_500_bf_scaffold_34951 Species: Caulobacter sp. AP07 (50%)	2	1746 bp	62.83	37.94	92.10
SCNpilot_cont_500_bf_scaffold_41834 Species: Caulobacter vibrioides (50%)	2	1509 bp	63.88	36.94	98.41
SCNpilot_cont_500_bf_scaffold_22601 Species: Candidatus Phaeomarinobacter ectocarpi (50%)	2	2442 bp	59.66	35.22	57.13
SCNpilot_cont_500_bf_scaffold_44078 Species: R_NC10_66_22 (50%)	2	1448 bp	61.19	35.39	91.78
SCNpilot_cont_500_bf_scaffold_43052 Species: Parvibaculum lavamentivorans (50%)	2	1474 bp	62.08	40.88	85.28
SCNpilot_cont_500_bf_scaffold_56985 Species: Parvibaculum lavamentivorans (50%)	2	1173 bp	64.54	39.00	93.09
SCNpilot_cont_500_bf_scaffold_26075 Species: Parvibaculum lavamentivorans (50%)	2	2193 bp	62.15	46.74	99.32
SCNpilot_cont_500_bf_scaffold_44353 Species: alpha proteobacterium MA2 (50%)	2	1440 bp	62.57	37.15	96.46
SCNpilot_cont_500_bf_scaffold_93410 Species: Bradyrhizobium sp. DFCI-1 (50%)	2	1391 bp	58.45	26.78	40.55
SCNpilot_cont_500_bf_scaffold_50716 Species: Nitrobacter hamburgensis (50%)	2	1291 bp	60.42	41.05	72.73
SCNpilot_cont_500_bf_scaffold_67449 Species: Methylobacterium sp. 4-46 (50%)	2	1000 bp	57.60	29.75	100.20
SCNpilot_cont_500_bf_scaffold_50212 Species: Hyphomicrobium denitrificans (100%)	2	1301 bp	64.49	24.60	100.08
SCNpilot_cont_500_bf_scaffold_50469 Species: Candidatus Phaeomarinobacter ectocarpi (50%)	2	1296 bp	60.88	42.25	94.68
SCNpilot_cont_500_bf_scaffold_64126 Species: Sphingomonas taxi (50%)	2	1052 bp	56.56	24.00	90.68
SCNpilot_cont_500_bf_scaffold_64894 Species: Loktanella sp. S4079 (50%)	2	1039 bp	65.26	41.87	91.82
SCNpilot_cont_500_bf_scaffold_51800 Species: Parvibaculum lavamentivorans (50%)	2	1269 bp	63.51	34.48	95.51
SCNpilot_cont_500_bf_scaffold_56510 Species: Rhodospirillum rubrum (50%)	2	1182 bp	63.11	35.74	100.25
SCNpilot_cont_500_bf_scaffold_25014 Species: Parvibaculum lavamentivorans (50%)	2	2262 bp	65.16	44.98	92.97
SCNpilot_cont_500_bf_scaffold_50740 Species: Parvibaculum lavamentivorans (50%)	2	1290 bp	60.31	31.20	96.74
SCNpilot_cont_500_bf_scaffold_57357 Species: Caenispirillum salinarum (50%)	2	1167 bp	60.58	36.20	96.40
SCNpilot_cont_500_bf_scaffold_62244 Species: uncultured bacterium (50%)	2	1083 bp	61.59	41.32	93.63
SCNpilot_cont_500_bf_scaffold_44908 Species: Phenylobacterium zucineum (50%)	2	1426 bp	62.48	41.37	99.93
SCNpilot_cont_500_bf_scaffold_94636 Species: Sphingomonas changbaiensis (50%)	2	1372 bp	59.18	31.89	49.20
SCNpilot_cont_500_bf_scaffold_57116 Species: Hyphomonadaceae bacterium BRH_c29 (50%)	2	1171 bp	62.77	29.46	97.87
SCNpilot_cont_500_bf_scaffold_23710 Species: Sphingomonas wittichii (100%)	1	2355 bp	55.84	29.94	88.79
SCNpilot_cont_500_bf_scaffold_52679 Species: Parvibaculum lavamentivorans (100%)	1	1253 bp	58.82	29.93	90.26
SCNpilot_cont_500_bf_scaffold_58256 Species: R_Phenylobacterium_69_31 (100%)	1	1151 bp	57.25	24.98	99.83
SCNpilot_cont_500_bf_scaffold_38685 Species: Phaeospirillum fulvum (100%)	1	1607 bp	59.55	30.34	99.88
SCNpilot_cont_500_bf_scaffold_50803 Species: Sphingobium yanoikuyae (100%)	1	1289 bp	59.27	26.96	56.56
SCNpilot_cont_500_bf_scaffold_33577 Species: RBG_16_Alphaproteobacteria_64_48_curated (100%)	1	1800 bp	61.61	31.94	92.17
SCNpilot_cont_500_bf_scaffold_55517 Species: Scytonema millei (100%)	1	1200 bp	64.75	51.67	100.00

Displaying items 301-350 of 368 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_CONT_300_BF_Rhizobiales_62_8) and add all its contigs / scaffolds to the organism you choose below

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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_CONT_500_BF_Alphaproteobacteria_61_35

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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