ggKbase home page

SCNpilot_cont_500_bf_scaffold_4258

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4258_1
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1152)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036D9B24 rbh
Membrane protein {ECO:0000313|EMBL:AJC47867.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein; K06143 inner membrane protein rbh
SCNpilot_cont_500_bf_scaffold_4258_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2943..4265
DNA (1323bp) protein (441aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KT39_9BURK rbh
signal transduction protein containing a membrane domain an EAL and a GGDEF domain rbh
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_cont_500_bf_scaffold_4258_3
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4287..5729)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FE44B9 rbh
sensory histidine kinase CreC rbh
SCNpilot_cont_500_bf_scaffold_4258_4
Xanthomonas alfalfae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6303..6995)
DNA (693bp) protein (231aa)
Two-component system regulatory protein n=3 Tax=Xanthomonas RepID=Q3BR67_XANC5 rbh
creB; DNA-binding response regulator CreB; K07663 two-component system, OmpR family, catabolic regulation response regulator CreB rbh
DNA-binding response regulator CreB {ECO:0000313|EMBL:AEO43055.1}; TaxID=981368 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. citrumelo F1.;"
SCNpilot_cont_500_bf_scaffold_4258_5
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7041..7898
DNA (858bp) protein (286aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
protein involved in catabolism of external DNA n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037F2FAA rbh
hypothetical protein; K07115 rbh
SCNpilot_cont_500_bf_scaffold_4258_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8071..8616
DNA (546bp) protein (182aa)
acyl-CoA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000309E761 rbh
Acyl-CoA synthetase {ECO:0000313|EMBL:AHY59755.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
N-acetyltransferase GCN5 rbh
SCNpilot_cont_500_bf_scaffold_4258_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8804..12259
DNA (3456bp) protein (1152aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair-coupling factor n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K339_STEMA rbh
Displaying 7 items

View Taxonomy