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SCNpilot_cont_500_bf_scaffold_4553

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4553_1
Xanthomonas perforans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..411)
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Xanthomonas RepID=Q3BMV9_XANC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGD16076.1}; TaxID=925776 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas perforans 91-118.;"
SCNpilot_cont_500_bf_scaffold_4553_2
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(408..1631)
DNA (1224bp) protein (408aa)
3-oxoacyl-[acyl-carrier protein] synthase II {ECO:0000313|EMBL:EKU26801.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EKU26801.1};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
fabF2; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] rbh
3-oxoacyl-ACP synthase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00037EAA90 rbh
SCNpilot_cont_500_bf_scaffold_4553_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1843..2118
DNA (276bp) protein (92aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E1666F
YcgL domain-containing protein DX03_00450 {ECO:0000256|HAMAP-Rule:MF_01866}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K09902 hypothetical protein
SCNpilot_cont_500_bf_scaffold_4553_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2111..5437
DNA (3327bp) protein (1109aa)
ankyrin n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F9AD5F rbh
Ankyrin {ECO:0000313|EMBL:AHY57182.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative transmembrane ankyrin repeat-containing protein; K06867 rbh
SCNpilot_cont_500_bf_scaffold_4553_5
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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5614..7293
DNA (1680bp) protein (560aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TLR7_RICCO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEF23197.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_cont_500_bf_scaffold_4553_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7600..8970
DNA (1371bp) protein (457aa)
Magnesium transporter n=2 Tax=Stenotrophomonas maltophilia RepID=J7VKB3_STEMA rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
magnesium transporter; K06213 magnesium transporter rbh
SCNpilot_cont_500_bf_scaffold_4553_7
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9082..9453
DNA (372bp) protein (124aa)
Transcriptional regulator, XRE family n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0APA7_MARMM
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABI65880.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_cont_500_bf_scaffold_4553_8
unknown

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comp(9559..9921)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4553_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10110..12218
DNA (2109bp) protein (703aa)
GCN5 family N-acetyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031CAD3C rbh
GCN5 family acetyltransferase {ECO:0000313|EMBL:AHY57186.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative; K09181 hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4553_10
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12536..12913
DNA (378bp) protein (126aa)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:EZP44434.1}; EC=3.1.1.24 {ECO:0000313|EMBL:EZP44434.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
alpha/beta hydrolase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E15AC2
putative alpha/beta hydrolase fold protein
SCNpilot_cont_500_bf_scaffold_4553_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13277..14233)
DNA (957bp) protein (319aa)
NADP-dependent aryl-alcohol dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002ED4E65 rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:AHY57195.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_4553_12
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14389..15258
DNA (870bp) protein (290aa)
methyltransferase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036FC4C1 rbh
Methyltransferase {ECO:0000313|EMBL:AKC86737.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
methyltransferase precursor rbh
SCNpilot_cont_500_bf_scaffold_4553_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15426..15968
DNA (543bp) protein (181aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rluE; ribosomal large subunit pseudouridine synthase e protein (EC:4.2.1.70); K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] rbh
ribosomal large subunit pseudouridine synthase E n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037DA075 rbh
SCNpilot_cont_500_bf_scaffold_4553_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16009..16362)
DNA (354bp) protein (118aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003609FC2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF53586.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_cont_500_bf_scaffold_4553_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16515..19016)
DNA (2502bp) protein (834aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13] rbh
RNA helicase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002FA7A0E rbh
RNA helicase {ECO:0000313|EMBL:AHY57199.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_500_bf_scaffold_4553_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19094..19909
DNA (816bp) protein (272aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] rbh
Deoxyribonuclease TatD n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3FE18_STEMA rbh
Preprotein translocase subunit TatD {ECO:0000313|EMBL:AHY57201.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_500_bf_scaffold_4553_17
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19959..20612)
DNA (654bp) protein (218aa)
OmpA/MotB domain protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L274_9GAMM rbh
OmpA/MotB domain protein {ECO:0000313|EMBL:EED38136.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
OmpA/MotB domain-containing protein
Displaying 17 items

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