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SCNpilot_cont_500_bf_scaffold_3205

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3205_1
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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99..614
DNA (516bp) protein (172aa)
UPF0178 protein XCR_2560 n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CGC6_XANCA
EMG2 protein; K09768 hypothetical protein
UPF0178 protein XCR_2560 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCNpilot_cont_500_bf_scaffold_3205_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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675..1223
DNA (549bp) protein (183aa)
YaeQ family protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JWH5_STEMA rbh
Uncharacterized protein {ECO:0000313|EMBL:KDE89293.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
YaeQ family protein rbh
SCNpilot_cont_500_bf_scaffold_3205_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1237..2433
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CYC6_STEMA rbh
Uncharacterized protein {ECO:0000313|EMBL:CCP11140.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
hypothetical protein; K07007 rbh
SCNpilot_cont_500_bf_scaffold_3205_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2527..4599
DNA (2073bp) protein (691aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000306EE89 rbh
Membrane protein {ECO:0000313|EMBL:AHY59345.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
FOG: PAS/PAC domain rbh
SCNpilot_cont_500_bf_scaffold_3205_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4703..5965)
DNA (1263bp) protein (421aa)
Putative reductase A1OC_01974 {ECO:0000256|HAMAP-Rule:MF_01838}; EC=1.3.1.- {ECO:0000256|HAMAP-Rule:MF_01838};; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
Short-chain alcohol dehydrogenase family n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3DPY3_STEMA rbh
short-chain alcohol dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_3205_6
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6172..7140)
DNA (969bp) protein (323aa)
Protein-export membrane protein SecF n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URQ8_PSEUP rbh
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_cont_500_bf_scaffold_3205_7
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7202..9043)
DNA (1842bp) protein (614aa)
preprotein translocase subunit SecD n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039DF5FE rbh
secD; protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
SCNpilot_cont_500_bf_scaffold_3205_8
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9104..9433)
DNA (330bp) protein (110aa)
preprotein translocase subunit YajC n=1 Tax=Xanthomonas sacchari RepID=UPI0002630F61
Preprotein translocase subunit YajC {ECO:0000313|EMBL:AJC47831.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
yajC; preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_cont_500_bf_scaffold_3205_9
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9700..10830)
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=427081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122.;"
queuine tRNA-ribosyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E7524B rbh
tgt; Queuine tRNA-ribosyltransferase rbh
SCNpilot_cont_500_bf_scaffold_3205_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10898..11857)
DNA (960bp) protein (320aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine tRNA ribosyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D9F349 rbh
SCNpilot_cont_500_bf_scaffold_3205_11
Xanthomonas euvesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11932..12159)
DNA (228bp) protein (76aa)
AsnC/Lrp family transcriptional regulator n=3 Tax=Xanthomonas RepID=G2LW37_9XANT
AsnC/Lrp family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:CAJ24374.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
Displaying 11 items

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