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SCNpilot_cont_500_bf_scaffold_3229

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3229_1
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..974)
DNA (972bp) protein (324aa)
Diguanylate phosphodiesterase n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LFZ7_AGRSH rbh
diguanylate phosphodiesterase rbh
Diguanylate phosphodiesterase {ECO:0000313|EMBL:ADY67979.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_500_bf_scaffold_3229_2
unknown

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1092..2078
DNA (987bp) protein (329aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3229_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2078..4186
DNA (2109bp) protein (703aa)
ligand-gated channel n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F68591 rbh
Ligand-gated channel {ECO:0000313|EMBL:AHY58640.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative hydroxamate-type ferrisiderophore receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_500_bf_scaffold_3229_4
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4228..5346
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000314749E rbh
PepSY-associated membrane protein rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_cont_500_bf_scaffold_3229_5
unknown

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5336..5455
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3229_6
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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5878..6390
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDBA0
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_cont_500_bf_scaffold_3229_7
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

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6392..6613
DNA (222bp) protein (74aa)
Transcriptional regulator, XRE family n=1 Tax=Azospirillum amazonense Y2 RepID=G1XYU1_9PROT
XRE family transcriptional regulator; K07727 putative transcriptional regulator
Tax=BJP_IG2102_Coriobacteriales_64_17
SCNpilot_cont_500_bf_scaffold_3229_8
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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6672..7670
DNA (999bp) protein (333aa)
Peptidase S15 n=1 Tax=Shewanella woodyi (strain ATCC 51908 / MS32) RepID=B1KHB1_SHEWM
peptidase S15
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_cont_500_bf_scaffold_3229_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8025..10796
DNA (2772bp) protein (924aa)
integral membrane sensor hybrid histidine kinase; K07677 two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] rbh
Integral membrane sensor hybrid histidine kinase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JZ25_STEMA rbh
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:AEM50078.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_cont_500_bf_scaffold_3229_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10793..12013
DNA (1221bp) protein (407aa)
Response regulator receiver modulated diguanylate phosphodiesterase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SKU4_STRM5 rbh
response regulator receiver modulated diguanylate phosphodiesterase rbh
Response regulator receiver modulated diguanylate phosphodiesterase {ECO:0000313|EMBL:ACF50442.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_cont_500_bf_scaffold_3229_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12133..13026
DNA (894bp) protein (298aa)
Hpt sensor hybrid histidine kinase; K07677 two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
Hpt sensor hybrid histidine kinase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SKU3_STRM5
Hpt sensor hybrid histidine kinase {ECO:0000313|EMBL:ACF50441.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_cont_500_bf_scaffold_3229_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13027..14313
DNA (1287bp) protein (429aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=J7V5P1_STEMA rbh
putative sensor histidine kinase/response regulator fusion protein rbh
Putative sensor histidine kinase/response regulator fusion protein {ECO:0000313|EMBL:CAQ44455.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_cont_500_bf_scaffold_3229_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14274..15179
DNA (906bp) protein (302aa)
Signal transduction histidine kinase; K07677 two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
Signal transduction histidine kinase n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KJV6_STEMA
Signal transduction histidine kinase {ECO:0000313|EMBL:CCH11345.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
SCNpilot_cont_500_bf_scaffold_3229_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15176..15817
DNA (642bp) protein (214aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=J7UPK1_STEMA rbh
putative two-component response regulator transcriptional regulator; K07687 two-component system, NarL family, captular synthesis response regulator RcsB rbh
Putative two-component response regulator transcriptional regulatory protein {ECO:0000313|EMBL:CAQ44454.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_cont_500_bf_scaffold_3229_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16105..18303
DNA (2199bp) protein (733aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYM4_STEMA rbh
outer membrane autotransporter barrel domain-containing protein rbh
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:AEM50074.1}; Flags: Precursor;; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Displaying 15 items

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