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SCNpilot_cont_500_bf_scaffold_4021

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4021_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..293)
DNA (291bp) protein (97aa)
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERW7_9RHIZ
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:EYR79367.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FAD linked oxidase-like protein
SCNpilot_cont_500_bf_scaffold_4021_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(413..1123)
DNA (711bp) protein (237aa)
Nopaline transport system permease protein NocM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPW3_9RHIZ rbh
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR79370.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter inner membrane subunit; K10019 octopine/nopaline transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_4021_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1127..1834)
DNA (708bp) protein (236aa)
Nopaline transport system permease protein NocQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA24_9RHIZ rbh
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR79371.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter inner membrane subunit; K10020 octopine/nopaline transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_4021_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1912..2709)
DNA (798bp) protein (266aa)
Nopaline-binding periplasmic protein NocT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERX3_9RHIZ rbh
Nopaline-binding periplasmic protein NocT {ECO:0000313|EMBL:EYR79372.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nocT; nopaline ABC transporter substrate-binding protein; K10018 octopine/nopaline transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_4021_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2763..4727)
DNA (1965bp) protein (655aa)
nocP2; nopaline ABC transporter nucleotide-binding protein/ATPase (EC:3.6.3.21) rbh
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B419A rbh
ABC-type histidine transport system ATPase component {ECO:0000313|EMBL:EYR79373.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_4021_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4839..5948)
DNA (1110bp) protein (370aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
Histidinol-phosphate aminotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EER4_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_4021_7
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5981..7069)
DNA (1089bp) protein (363aa)
phthalate 4,5-dioxygenase (EC:1.14.12.7) rbh
Phthalate 4,5-dioxygenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YCA7_PARAH rbh
Oxidoreductase {ECO:0000313|EMBL:KGE79913.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_cont_500_bf_scaffold_4021_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7082..8128)
DNA (1047bp) protein (349aa)
vanillate O-demethylase oxygenase (EC:1.14.13.82) rbh
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5S8_9RHIZ rbh
Vanillate O-demethylase oxygenase subunit {ECO:0000313|EMBL:CDN96421.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_500_bf_scaffold_4021_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8247..8381
DNA (135bp) protein (45aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWW8_9RHIZ
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR79377.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
SCNpilot_cont_500_bf_scaffold_4021_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8418..9089
DNA (672bp) protein (224aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWW8_9RHIZ rbh
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR79377.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
Displaying 10 items

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