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SCNpilot_cont_500_bf_scaffold_4200

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4200_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1425
DNA (1425bp) protein (475aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
guaB; inositol-5-monophosphate dehydrogenase; K00088 IMP dehydrogenase [EC:1.1.1.205]
inosine-5`-monophosphate dehydrogenase n=1 Tax=Rhizobium meliloti RepID=UPI000360E848
SCNpilot_cont_500_bf_scaffold_4200_2
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1427..2008
DNA (582bp) protein (194aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B42CFF
Uncharacterized protein {ECO:0000313|EMBL:CDM56575.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4200_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2130..2492
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003633AB1
Uncharacterized protein {ECO:0000313|EMBL:EYR80094.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4200_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2747..3166
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NAP7_RHISP
Uncharacterized protein {ECO:0000313|EMBL:AHK43504.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4200_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3226..3618)
DNA (393bp) protein (131aa)
Glutathione-dependent formaldehyde-activating GFA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLW6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80150.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4200_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3629..4564)
DNA (936bp) protein (312aa)
Putative transcriptional regulator protein, LysR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6V9_9RHIZ
Putative transcriptional regulator protein, LysR family {ECO:0000313|EMBL:ENN88911.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator, LysR family
SCNpilot_cont_500_bf_scaffold_4200_7
unknown

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4764..5045
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4200_8
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5175..5999)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IM62_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE99818.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4200_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6120..7493)
DNA (1374bp) protein (458aa)
glutamate/cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
Glutamate--cysteine ligase, plant type n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H278_RHILT
Glutamate--cysteine ligase, plant type {ECO:0000313|EMBL:EJB04068.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_cont_500_bf_scaffold_4200_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7721..8458)
DNA (738bp) protein (246aa)
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J9V8_AGRRK
SCNpilot_cont_500_bf_scaffold_4200_11
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8534..8785)
DNA (252bp) protein (84aa)
inorganic phosphate transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI000370E70C
Phosphate transporter {ECO:0000313|EMBL:EJZ20342.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
phosphate transporter; K03306 inorganic phosphate transporter, PiT family
Displaying 11 items

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