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SCNpilot_cont_500_bf_scaffold_4208

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4208_1
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1562
DNA (1560bp) protein (520aa)
microcin C ABC transporter ATP-binding protein YejF n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036BAEB5
ABC-type uncharacterized transport system, duplicated ATPase component {ECO:0000313|EMBL:EJL52082.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
ABC transporter; K13896 microcin C transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_4208_2
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1574..2533
DNA (960bp) protein (320aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit; K12972 gyoxylate/hydroxypyruvate reductase A [EC:1.1.1.79 1.1.1.81]
2-hydroxyacid dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000379620D
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit {ECO:0000313|EMBL:EPF00287.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_cont_500_bf_scaffold_4208_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2672..3976
DNA (1305bp) protein (435aa)
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00570}; Short=NAPRTase {ECO:0000255|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000255|HAMAP-Rule:MF_00570};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Nicotinate phosphoribosyltransferase n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5RY64_RHIET
SCNpilot_cont_500_bf_scaffold_4208_4
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4042..4497
DNA (456bp) protein (152aa)
Rrf2 family transcriptional regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B7770D
Transcriptional regulator protein {ECO:0000313|EMBL:AJD42331.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transcriptional regulator protein
SCNpilot_cont_500_bf_scaffold_4208_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4498..4848)
DNA (351bp) protein (117aa)
Arsenate reductase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7I5_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:AHK43097.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
arsenate reductase
SCNpilot_cont_500_bf_scaffold_4208_6
unknown

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comp(4871..4996)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4208_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5182..6984
DNA (1803bp) protein (601aa)
Chaperone protein HtpG n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X185_RHIFR
htpG; chaperone protein HtpG
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_500_bf_scaffold_4208_8
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7076..7306)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PY61_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM74859.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_cont_500_bf_scaffold_4208_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7634..10249
DNA (2616bp) protein (872aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SIA3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24983.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_500_bf_scaffold_4208_10
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10327..11865)
DNA (1539bp) protein (513aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
Histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3] rbh
Histidine ammonia-lyase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H4W6_RHIRD rbh
SCNpilot_cont_500_bf_scaffold_4208_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12061..12990)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JB26_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:GAJ96221.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_cont_500_bf_scaffold_4208_12
Brucella abortus, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13007..13444)
DNA (438bp) protein (146aa)
Transcriptional regulator, AsnC family n=169 Tax=Brucella RepID=B2SDC3_BRUA1
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:EEX60261.1}; TaxID=520450 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella abortus bv. 2 str. 86/8/59.;"
SCNpilot_cont_500_bf_scaffold_4208_13
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13560..14480
DNA (921bp) protein (307aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
rocF; arginase; K01476 arginase [EC:3.5.3.1]
Arginase family n=1 Tax=uncultured organism RepID=T1W9T8_9ZZZZ rbh
SCNpilot_cont_500_bf_scaffold_4208_14
Brucella neotomae, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14480..15472
DNA (993bp) protein (331aa)
arcB; ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Ornithine cyclodeaminase n=2 Tax=Brucella RepID=D1D0Q8_9RHIZ
Ornithine cyclodeaminase {ECO:0000313|EMBL:EEY02351.1}; TaxID=520456 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella neotomae 5K33.;"
SCNpilot_cont_500_bf_scaffold_4208_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15559..16872
DNA (1314bp) protein (438aa)
D-amino acid oxidase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JL53_AGRRK
D-amino acid oxidase {ECO:0000313|EMBL:KEA08621.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
D-amino acid oxidase
Displaying 15 items

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