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SCNpilot_cont_500_bf_scaffold_4275

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4275_1
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1138)
DNA (1137bp) protein (379aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
purD; phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
phosphoribosylamine--glycine ligase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000363DA04
SCNpilot_cont_500_bf_scaffold_4275_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1314..3638
DNA (2325bp) protein (775aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AQP0_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS99827.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein; K06959 uncharacterized protein rbh
SCNpilot_cont_500_bf_scaffold_4275_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4067..5350
DNA (1284bp) protein (428aa)
Cyclopropane-fatty-acyl-phospholipid synthase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHS7_RHITR
cfa1; cyclopropane-fatty-acyl-phospholipid synthase protein
Cyclopropane-fatty-acyl-phospholipid synthase protein {ECO:0000313|EMBL:AGB70271.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_4275_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5485..6294
DNA (810bp) protein (270aa)
Putative MipA family outer membrane scaffold protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V762_9RHIZ
Putative MipA family outer membrane scaffold protein {ECO:0000313|EMBL:ENN89016.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
MipA family outer membrane scaffold protein; K07274 outer membrane protein
SCNpilot_cont_500_bf_scaffold_4275_5
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6381..7337
DNA (957bp) protein (319aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
ubiA; 4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] rbh
4-hydroxybenzoate polyprenyl transferase, proteobacterial n=1 Tax=Rhizobium sp. CF080 RepID=J2K5Q0_9RHIZ
SCNpilot_cont_500_bf_scaffold_4275_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7178..7933)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQB4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80180.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4275_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8250..9950
DNA (1701bp) protein (567aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215B1_RHOPB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD88025.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_500_bf_scaffold_4275_8
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9950..10582
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215B1_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KJC37276.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4275_9
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10579..12003)
DNA (1425bp) protein (475aa)
putative D-lactate ferricytochrome C oxidoreductase (EC:1.1.2.4)
Putative D-lactate ferricytochrome C oxidoreductase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q1L4_9RHIZ
D-2-hydroxyglutarate dehydrogenase {ECO:0000313|EMBL:KIV68571.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_cont_500_bf_scaffold_4275_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12021..12995)
DNA (975bp) protein (325aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Probable translation factor protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PRJ2_RHIE6 rbh
translation factor protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein rbh
SCNpilot_cont_500_bf_scaffold_4275_11
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13092..13697)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VSF5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ20450.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4275_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13987..14523
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAK9_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:AHK44709.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4275_13
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14594..15592)
DNA (999bp) protein (333aa)
Mg2+/Co2+ transporter n=1 Tax=Rhizobium sp. CF080 RepID=J3C5P3_9RHIZ rbh
Mg2 transporter protein CorA family protein {ECO:0000313|EMBL:EUC01349.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
magnesium and cobalt transporter protein; K16074 zinc transporter
SCNpilot_cont_500_bf_scaffold_4275_14
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15727..17502
DNA (1776bp) protein (592aa)
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Rhizobium gallicum RepID=UPI00037D8E9C
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EPE99414.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_cont_500_bf_scaffold_4275_15
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17499..18245
DNA (747bp) protein (249aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JSK4_AGRVS
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ACM35697.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_4275_16
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18507..19553)
DNA (1047bp) protein (349aa)
SAM-dependent methyltransferase, tRNA(Uracil-5)-methyltransferase n=1 Tax=Rhizobium sp. CF122 RepID=J2J0T1_9RHIZ
SAM-dependent methyltransferase, tRNA(Uracil-5)-methyltransferase {ECO:0000313|EMBL:EJL54653.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
tRNA (Uracil-5-)-methyltransferase superfamily
SCNpilot_cont_500_bf_scaffold_4275_17
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19550..20296)
DNA (747bp) protein (249aa)
hemolysin-like protein; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] rbh
Hemolysin-like protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MHG2_RHISN rbh
Hemolysin-like protein {ECO:0000313|EMBL:ACP24290.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_500_bf_scaffold_4275_18
unknown

Not on your lists

comp(20408..20617)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4275_19
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20934..21821
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VDC0_9RHIZ
PF14415 domain protein {ECO:0000313|EMBL:CDN46699.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4275_20
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22011..22919
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NAZ8_RHISP rbh
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:KJF71233.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4275_21
unknown

Not on your lists

23023..23340
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4275_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23345..25255)
DNA (1911bp) protein (637aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD97_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_4275_23
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25377..25907)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AJA5_RHIRD
Pirin {ECO:0000313|EMBL:KGE82787.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
putative Pirin family protein
SCNpilot_cont_500_bf_scaffold_4275_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26304..26573)
DNA (270bp) protein (90aa)
xseB; exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
exodeoxyribonuclease VII small subunit n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000365B7C5
SCNpilot_cont_500_bf_scaffold_4275_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26576..27190)
DNA (615bp) protein (205aa)
deacetylase; K01454 [EC:3.5.1.48]
Probable deacetylase protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2KBQ8_RHIEC
Probable deacetylase protein {ECO:0000313|EMBL:ABC89728.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Displaying 25 items

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