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SCNpilot_cont_500_bf_scaffold_4326

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4326_1
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1730)
DNA (1728bp) protein (576aa)
GTP pyrophosphokinase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003820132
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:EJJ27830.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
GTP pyrophosphokinase
SCNpilot_cont_500_bf_scaffold_4326_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1825..2232)
DNA (408bp) protein (136aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=1 Tax=Rhizobium sp. CF122 RepID=J2ILS0_9RHIZ
SCNpilot_cont_500_bf_scaffold_4326_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2534..3112
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC67_AGRRK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM25988.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_4326_4
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3259..4794
DNA (1536bp) protein (512aa)
Methyl-accepting chemotaxis protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L8Z8_AGRSH rbh
mcpV2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
Chemotaxis protein {ECO:0000313|EMBL:KJF69455.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
SCNpilot_cont_500_bf_scaffold_4326_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4950..5426)
DNA (477bp) protein (159aa)
SsrA-binding protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ACD8_RHIRD rbh
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
smpB; trans-translation protein, binds tmRNA and tRNA (SsrA-binding protein) rbh
SCNpilot_cont_500_bf_scaffold_4326_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5591..6475)
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
dapAch2; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PUM9_RHIE6
SCNpilot_cont_500_bf_scaffold_4326_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6758..8863
DNA (2106bp) protein (702aa)
murein transglycosylase (EC:3.2.1.-); K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Soluble lytic murein transglycosylase-like protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AWH3_9RHIZ
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:EJJ27825.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_500_bf_scaffold_4326_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8802..9605
DNA (804bp) protein (268aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Rhizobium sp. CF122 RepID=J2ILS5_9RHIZ rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL56945.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hydrolase
SCNpilot_cont_500_bf_scaffold_4326_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9814..10881)
DNA (1068bp) protein (356aa)
Porin outer membrane protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTV7_RHITR
porin outer membrane protein
Porin outer membrane protein {ECO:0000313|EMBL:AGB74131.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_4326_10
unknown

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11495..11773
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4326_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11830..12147
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036A26FD
resolvase domain-containing protein
Resolvase, N-terminal domain {ECO:0000313|EMBL:ABQ69730.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_4326_trna_1
unknown

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comp(12539..12625)
DNA (87bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_4326_12
unknown

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comp(12841..12987)
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying 13 items

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