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SCNpilot_cont_500_bf_scaffold_4390

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4390_1
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20..658)
DNA (639bp) protein (213aa)
dhaL2; PTS-dependent dihydroxyacetone kinase,ADP-binding subunit (EC:2.7.-.-); K05879 dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]
Dihydroxyacetone kinase, phosphoprotein-dependent, L subunit n=1 Tax=Rhizobium sp. CF142 RepID=J1TC86_9RHIZ
Dihydroxyacetone kinase, phosphoprotein-dependent, L subunit {ECO:0000313|EMBL:EJJ29406.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_500_bf_scaffold_4390_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(679..2769)
DNA (2091bp) protein (697aa)
dihydroxyacetone kinase; K05878 dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-]
Dihydroxyacetone kinase n=1 Tax=Rhizobium sp. AP16 RepID=J2DEA2_9RHIZ
Dihydroxyacetone kinase DhaK subunit {ECO:0000313|EMBL:GAJ92261.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_500_bf_scaffold_4390_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2913..3554)
DNA (642bp) protein (214aa)
dihydroxyacetone kinase subunit DhaL; K05879 dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]
Dihydroxyacetone kinase, L subunit n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X6B9_OCHA4
Dihydroxyacetone kinase, L subunit {ECO:0000313|EMBL:ABS16773.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_4390_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3568..4560)
DNA (993bp) protein (331aa)
Glycerone kinase; K05878 dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-] rbh
Glycerone kinase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X6B8_OCHA4 rbh
Dihydroxyacetone kinase {ECO:0000313|EMBL:AHK46174.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_cont_500_bf_scaffold_4390_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4578..5351)
DNA (774bp) protein (258aa)
short-chain dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037B4A4F rbh
Putative short chain dehydrogenase adh_short {ECO:0000313|EMBL:AHK46173.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
short chain dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_4390_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5418..6407)
DNA (990bp) protein (330aa)
Rhizopine ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JN76_AGRRK rbh
mocBch2; rhizopine ABC transporter; K10439 ribose transport system substrate-binding protein rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJK88300.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_500_bf_scaffold_4390_7
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6529..7533)
DNA (1005bp) protein (335aa)
Ribose ABC transporter permease n=3 Tax=Ochrobactrum RepID=C4WQ47_9RHIZ rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:ERI14535.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
sugar ABC transporter; K10440 ribose transport system permease protein
SCNpilot_cont_500_bf_scaffold_4390_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7586..8359)
DNA (774bp) protein (258aa)
rbsA-1; ribose ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UVG8_9RHIZ
ABC transporter {ECO:0000313|EMBL:ENN85660.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_500_bf_scaffold_4390_9
unknown

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9332..9592
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4390_10
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9687..10571
DNA (885bp) protein (295aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CBS6_9RHIZ rbh
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:EJN02489.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter rbh
SCNpilot_cont_500_bf_scaffold_4390_11
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10639..10872
DNA (234bp) protein (78aa)
UPI0003CFDABE related cluster n=1 Tax=unknown RepID=UPI0003CFDABE
AbrB family transcriptional regulator {ECO:0000313|EMBL:ESZ19251.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
AbrB/SpoV domain-containing protein
SCNpilot_cont_500_bf_scaffold_4390_12
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10869..11273
DNA (405bp) protein (135aa)
UPI0003CF3ADF related cluster n=1 Tax=unknown RepID=UPI0003CF3ADF
DNA-binding protein {ECO:0000313|EMBL:ESW79225.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein; K07062
SCNpilot_cont_500_bf_scaffold_4390_13
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11270..12328)
DNA (1059bp) protein (353aa)
Oxidoreductase protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PTB6_9RHIZ
Oxidoreductase protein {ECO:0000313|EMBL:CCM77078.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
mocA; oxidoreductase
SCNpilot_cont_500_bf_scaffold_4390_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12465..12761
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9S1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36340.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transcriptional regulatory protein AraC family
SCNpilot_cont_500_bf_scaffold_4390_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12758..13321
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EA1C8
Uncharacterized protein {ECO:0000313|EMBL:EKS36340.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
AraC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4390_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13409..14317
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QX85_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX54751.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4390_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14496..15323
DNA (828bp) protein (276aa)
Putative DL-2-aminoadipic acid ABC transporter,periplasmic solute-binding component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNF7_9RHIZ rbh
Putative DL-2-aminoadipic acid ABC transporter,periplasmic solute-binding component {ECO:0000313|EMBL:EYR82683.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fliY2; cystine-binding periplasmic protein FliY rbh
SCNpilot_cont_500_bf_scaffold_4390_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15405..16685
DNA (1281bp) protein (427aa)
Putative oxidoreductase OrdL {ECO:0000313|EMBL:EYR82684.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR82684.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative oxidoreductase OrdL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7K7_9RHIZ rbh
oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_4390_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16706..17023
DNA (318bp) protein (106aa)
Putative amino-acid transport system permease ABC transporter protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQD5_9RHIZ
Putative amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AHK47089.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
amino-acid transport system permease ABC transporter protein
Displaying 19 items

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