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SCNpilot_cont_500_bf_scaffold_4412

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4412_1
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..112
DNA (111bp) protein (37aa)
50S ribosomal protein L13 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A404_RHIFH
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_4412_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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115..579
DNA (465bp) protein (155aa)
30S ribosomal protein S9 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QBN0_9RHIZ
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_cont_500_bf_scaffold_4412_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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716..1666
DNA (951bp) protein (317aa)
Agmatinase {ECO:0000313|EMBL:EMS97913.1}; EC=3.5.3.11 {ECO:0000313|EMBL:EMS97913.1};; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
speB; agmatinase; K01480 agmatinase [EC:3.5.3.11] rbh
Agmatinase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AIG5_RHIRD rbh
SCNpilot_cont_500_bf_scaffold_4412_4
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1682..2308)
DNA (627bp) protein (209aa)
Tryptophan synthase alpha chain {ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00108586};; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
Tryptophan synthase alpha chain n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QBC8_9RHOB
SCNpilot_cont_500_bf_scaffold_4412_5
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2622..3314
DNA (693bp) protein (231aa)
Streptomycin 3''-kinase Str n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3V5_9RHIZ
Streptomycin phosphotransferase {ECO:0000313|EMBL:CDN47345.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
strB; streptomycin resistance protein
SCNpilot_cont_500_bf_scaffold_4412_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3333..4415)
DNA (1083bp) protein (361aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
heme A synthase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003667C3C rbh
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 rbh
SCNpilot_cont_500_bf_scaffold_4412_7
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4546..4758
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NF64_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF18962.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4412_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4878..6104
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JVB4_AGRVS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM36194.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_4412_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6071..8224)
DNA (2154bp) protein (718aa)
Succinoglycan biosynthesis transport protein ExoP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3V1_9RHIZ rbh
Succinoglycan biosynthesis transport protein ExoP {ECO:0000313|EMBL:EYR81347.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polysaccharide synthesis/transport transmembrane protein
SCNpilot_cont_500_bf_scaffold_4412_10
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8405..8980
DNA (576bp) protein (192aa)
Polysaccharide export system protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD08_AGRRK
polysaccharide export system protein; K01991 polysaccharide export outer membrane protein
Periplasmic protein involved in polysaccharide export {ECO:0000313|EMBL:EJK85550.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_500_bf_scaffold_4412_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8987..10141
DNA (1155bp) protein (385aa)
Glycosyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2IN88_9RHIZ rbh
Glycosyltransferase, family 1 {ECO:0000313|EMBL:CDN47338.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
putative glycosyltransferase protein rbh
SCNpilot_cont_500_bf_scaffold_4412_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10277..11713
DNA (1437bp) protein (479aa)
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase GumD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEV8_9RHIZ
UDP-phosphate glucose phosphotransferase {ECO:0000313|EMBL:KDP70959.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
glycosyl transferase
SCNpilot_cont_500_bf_scaffold_4412_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11710..12957
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1X7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EHS53314.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4412_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12954..13604
DNA (651bp) protein (217aa)
Putative glycosyltransferase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3U6_9RHIZ
Putative glycosyltransferase protein {ECO:0000313|EMBL:EYR81352.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glycosyltransferase protein
SCNpilot_cont_500_bf_scaffold_4412_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13660..14193
DNA (534bp) protein (178aa)
Glycosyltransferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JD04_AGRRK
glycosyltransferase
Glycosyltransferase protein {ECO:0000313|EMBL:ACM26141.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_4412_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14190..14483
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0ND09_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KGD99310.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_cont_500_bf_scaffold_4412_trna_1
unknown

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comp(14577..14650)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_4412_17
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14800..14988
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037BE5E3
Uncharacterized protein {ECO:0000313|EMBL:EJL52393.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_cont_500_bf_scaffold_4412_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15190..15828
DNA (639bp) protein (213aa)
Outer membrane protein n=2 Tax=Rhizobium etli RepID=Q2K636_RHIEC
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGS22728.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_500_bf_scaffold_4412_19
unknown

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15952..16107
DNA (156bp) protein (52aa)

This feature has no annotations

Displaying 20 items

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