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SCNpilot_cont_500_bf_scaffold_5868

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5868_1
unknown

Not on your lists

comp(1..96)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5868_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(235..771)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AEA8_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE57194.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
cell cycle regulator GcrA
SCNpilot_cont_500_bf_scaffold_5868_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1100..2299
DNA (1200bp) protein (400aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
argD; acetylornithine transaminase; K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
Acetylornithine aminotransferase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J8K3_AGRRK
SCNpilot_cont_500_bf_scaffold_5868_4
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2389..3306
DNA (918bp) protein (306aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Rhizobium sp. RepID=L0NAG1_RHISP rbh
SCNpilot_cont_500_bf_scaffold_5868_5
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3492..4487
DNA (996bp) protein (332aa)
Hsp33-like chaperonin n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PYJ4_9RHIZ rbh
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hslO; Hsp33-like chaperonin; K04083 molecular chaperone Hsp33
SCNpilot_cont_500_bf_scaffold_5868_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4522..4914)
DNA (393bp) protein (131aa)
magnesium transporter ApaG n=1 Tax=Rhizobium leguminosarum RepID=UPI000379B82A
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
apaG; ApaG protein; K06195 ApaG protein
SCNpilot_cont_500_bf_scaffold_5868_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5098..6282)
DNA (1185bp) protein (395aa)
O-succinylhomoserine sulfhydrylase MetZ {ECO:0000313|EMBL:EYR83197.1}; EC=2.5.1.- {ECO:0000313|EMBL:EYR83197.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
metZ; O-succinylhomoserine sulfhydrylase MetZ (EC:2.5.1.-) rbh
O-succinylhomoserine sulfhydrylase MetZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG21_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_5868_8
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6477..7577
DNA (1101bp) protein (367aa)
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:KIV62250.1}; EC=3.5.4.13 {ECO:0000313|EMBL:KIV62250.1};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
dcd; deoxycytidine triphosphate (dCTP) deaminase (EC:3.5.4.13) rbh
2''''-deoxycytidine 5''''-triphosphate deaminase n=1 Tax=Rhizobium giardinii RepID=UPI00037FFF36
SCNpilot_cont_500_bf_scaffold_5868_9
unknown

Not on your lists

8047..9681
DNA (1635bp) protein (545aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_5868_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9762..10634
DNA (873bp) protein (291aa)
Amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J8Z5_AGRRK
amino acid ABC transporter; K02030 polar amino acid transport system substrate-binding protein
Amino acid ABC transporter {ECO:0000313|EMBL:ACM25397.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_5868_11
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10679..11089)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFP1_RHITR
hypothetical protein
Tellurite resistance protein TerB {ECO:0000313|EMBL:AJY44531.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
SCNpilot_cont_500_bf_scaffold_5868_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11235..12005)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KA54_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC74349.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5868_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12062..12727)
DNA (666bp) protein (222aa)
Putative phage repressor protein probable autocatalytic cleavage (S24/S26 family peptidase) n=1 Tax=Rhizobium sp. RepID=L0NA28_RHISP rbh
Bacteriophage repressor protein C1 {ECO:0000313|EMBL:CDN57327.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
phage repressor rbh
SCNpilot_cont_500_bf_scaffold_5868_14
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12896..13543)
DNA (648bp) protein (216aa)
Two-component response regulator protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q234_9RHIZ rbh
Two-component response regulator protein {ECO:0000313|EMBL:EKF57769.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
LuxR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_5868_15
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13599..14012)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NA34_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF17820.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
putative signal peptide protein
SCNpilot_cont_500_bf_scaffold_5868_16
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14118..14459
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NAP8_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CDX33972.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5868_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14521..15426
DNA (906bp) protein (302aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
pyrD; dihydroorotate dehydrogenase 2 (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KA51_RHILT
SCNpilot_cont_500_bf_scaffold_5868_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15526..16113)
DNA (588bp) protein (196aa)
Putative efflux protein, MATE family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VNF1_RHILT
DNA-damage-inducible protein DinF {ECO:0000313|EMBL:AIC25765.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
dinF; DNA-damage-inducible protein DinF
SCNpilot_cont_500_bf_scaffold_5868_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16868..17353)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIT8_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB70009.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_5868_20
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17356..17622)
DNA (267bp) protein (89aa)
Transmembrane protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FD69_9RHIZ
Transmembrane protein {ECO:0000313|EMBL:EHS49287.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5868_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17748..18677
DNA (930bp) protein (310aa)
methyltransferase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000380B7B5 rbh
Methyltransferase {ECO:0000313|EMBL:AHF82326.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5868_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18894..19529
DNA (636bp) protein (212aa)
Putative transmembrane protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MLT3_RHIL3 rbh
transmembrane protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:CAK06070.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_500_bf_scaffold_5868_23
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19575..20306
DNA (732bp) protein (244aa)
lhr; ATP-dependent RNA/DNA helicase (EC:3.6.1.-); K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
helicase n=1 Tax=Rhizobium mongolense RepID=UPI0003B37172
DEAD/DEAH box type DNA/RNA helicase protein {ECO:0000313|EMBL:AJD39951.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_cont_500_bf_scaffold_5868_24
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20357..22027
DNA (1671bp) protein (557aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
DEXH box helicase, DNA ligase-associated n=1 Tax=Rhizobium sp. CF122 RepID=J3BK34_9RHIZ
DEXH box helicase, DNA ligase-associated {ECO:0000313|EMBL:EJL53081.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_cont_500_bf_scaffold_5868_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22053..22778
DNA (726bp) protein (242aa)
phosphoesterase n=1 Tax=Rhizobium leguminosarum RepID=UPI000379EB33
metallophosphoesterase; K06953
Metallophosphoesterase {ECO:0000313|EMBL:ACS54544.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_500_bf_scaffold_5868_26
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22911..23363
DNA (453bp) protein (151aa)
UPI0003CE8295 related cluster n=1 Tax=unknown RepID=UPI0003CE8295
Cupin {ECO:0000313|EMBL:ESZ20639.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
cupin
SCNpilot_cont_500_bf_scaffold_5868_27
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23404..23547)
DNA (144bp) protein (48aa)
membrane protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000367507A
Uncharacterized protein {ECO:0000313|EMBL:AJD39957.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transmembrane protein
SCNpilot_cont_500_bf_scaffold_5868_28
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23489..24124)
DNA (636bp) protein (212aa)
Putative transmembrane protein n=1 Tax=Rhizobium sp. RepID=L0NAR2_RHISP
Uncharacterized protein {ECO:0000313|EMBL:EUB98666.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5868_29
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24124..24654)
DNA (531bp) protein (177aa)
Permease protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J916_AGRRK
permease; K07090
Permease {ECO:0000313|EMBL:KEA05202.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Displaying 29 items

View Taxonomy