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SCNpilot_cont_500_bf_scaffold_7573

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_7573_1
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..121
DNA (120bp) protein (40aa)
Patatin family protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HJ27_9RHIZ
Patatin family protein {ECO:0000313|EMBL:EPE98742.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
rssA; NTE family protein RssA
SCNpilot_cont_500_bf_scaffold_7573_2
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(174..608)
DNA (435bp) protein (145aa)
inosine-5-monophosphate dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003623EFE
Uncharacterized protein {ECO:0000313|EMBL:CCF19471.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
inosine-5`-monophosphate dehydrogenase
SCNpilot_cont_500_bf_scaffold_7573_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(754..1530)
DNA (777bp) protein (259aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B7159F
Rhombiod family peptidase protein {ECO:0000313|EMBL:AJD41335.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
rhomboid family protein
SCNpilot_cont_500_bf_scaffold_7573_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1825..2439
DNA (615bp) protein (205aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2K849_RHIEC
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ABC90987.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_cont_500_bf_scaffold_7573_5
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2568..3176
DNA (609bp) protein (203aa)
pilus assembly protein PilZ n=1 Tax=Rhizobium mongolense RepID=UPI0003B74D67
Pilus assembly PilZ domain-containing protein {ECO:0000313|EMBL:AJD41337.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7573_6
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3686..4303
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=U4PU14_9RHIZ
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:KIV68323.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_cont_500_bf_scaffold_7573_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4585..5319
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZQL5_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI55143.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_500_bf_scaffold_7573_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5532..6590
DNA (1059bp) protein (353aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Probable serine-type D-Ala-D-Ala carboxypeptidase protein {ECO:0000313|EMBL:ACE91255.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ACE91255.1};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Rhizobium phaseoli RepID=UPI0003751BE8
SCNpilot_cont_500_bf_scaffold_7573_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6587..6859
DNA (273bp) protein (91aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Sporulation domain-containing protein (Fragment) n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F8J1_9RHIZ
Sporulation domain-containing protein {ECO:0000313|EMBL:EHS50898.1}; Flags: Fragment;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_cont_500_bf_scaffold_7573_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6961..7227
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035E3088
Uncharacterized protein {ECO:0000313|EMBL:EYR79886.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7573_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7397..7831)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3ATW2_9RHIZ
Putative conserved protein UCP032025 {ECO:0000313|EMBL:EUB95514.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7573_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7951..8373)
DNA (423bp) protein (141aa)
sdaA; L-serine dehydratase; K01752 L-serine dehydratase [EC:4.3.1.17]
L-serine dehydratase n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JEV6_9RHIZ
Serine dehydratase {ECO:0000313|EMBL:KAJ33243.1}; Flags: Fragment;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_500_bf_scaffold_7573_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8364..9278)
DNA (915bp) protein (305aa)
sdaA; L-serine dehydratase SdaA (EC:4.3.1.17)
serine ammonia-lyase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036576D0
L-serine dehydratase 1 {ECO:0000313|EMBL:CDN48050.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_cont_500_bf_scaffold_7573_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9411..10100
DNA (690bp) protein (230aa)
Putative membrane protein n=1 Tax=Rhizobium sp. CF142 RepID=J2KV61_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EJJ25032.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7573_15
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10157..11104
DNA (948bp) protein (316aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B36720
Uncharacterized protein {ECO:0000313|EMBL:AJD41345.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7573_16
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11118..11591
DNA (474bp) protein (158aa)
isoprenylcysteine carboxyl methyltransferase n=1 Tax=Rhizobium mongolense RepID=UPI0003B4F4D2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP25022.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_500_bf_scaffold_7573_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11603..11989)
DNA (387bp) protein (129aa)
Transcriptional regulator, MerR family protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B619_RHIRD
MerR family transcriptional regulator {ECO:0000313|EMBL:KGE00611.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
MerR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_7573_18
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12052..13470)
DNA (1419bp) protein (473aa)
magnesium transporter n=1 Tax=Rhizobium RepID=UPI00037E4D33 rbh
magnesium transporter; K06213 magnesium transporter rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_500_bf_scaffold_7573_19
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13641..14135
DNA (495bp) protein (165aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
peptide deformylase n=1 Tax=Rhizobium mongolense RepID=UPI0003B6F8B9
SCNpilot_cont_500_bf_scaffold_7573_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14206..14691
DNA (486bp) protein (162aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C0X2_RHILT
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJC72555.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7573_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14692..15087)
DNA (396bp) protein (132aa)
stress-induced protein n=1 Tax=Rhizobium radiobacter RepID=UPI00035C2BC0
Stress-induced protein {ECO:0000313|EMBL:EPR07964.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
putative redox protein, regulator of disulfide bond formation
Displaying 21 items

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