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SCNpilot_cont_500_bf_scaffold_2303

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2303_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..805
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003754E12
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2303_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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892..2409
DNA (1518bp) protein (506aa)
Putative ABC transporter protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UW54_9RHIZ rbh
Putative ABC transporter protein {ECO:0000313|EMBL:ENN84981.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter substrate binding protein (dipeptide); K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_2303_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2421..3371
DNA (951bp) protein (317aa)
Dipeptide transport system permease protein DppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRX1_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR84429.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative substrate-binding component of ABC transporter; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_2303_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3368..4228
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWM5_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR84428.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptide ABC transporter; K02034 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_2303_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4231..6036
DNA (1806bp) protein (602aa)
ABC transporter ATP-binding protein yliA n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U3U8_9RHIZ rbh
ABC transporter ATP-binding protein yliA {ECO:0000313|EMBL:ENN84978.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative peptide transport fused subunits of ABC superfamily: ATP-binding components
SCNpilot_cont_500_bf_scaffold_2303_6
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6163..6546
DNA (384bp) protein (128aa)
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. (EC:4.4.1.5)
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HV10_9FIRM
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily {ECO:0000313|EMBL:CCY33530.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
SCNpilot_cont_500_bf_scaffold_2303_7
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6630..8168)
DNA (1539bp) protein (513aa)
pcd; piperideine-6-carboxylate dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium sp. CF122 RepID=J2IYU8_9RHIZ
Aldehyde dehydrogenase protein {ECO:0000313|EMBL:AJD43204.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_cont_500_bf_scaffold_2303_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8216..9511)
DNA (1296bp) protein (432aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0JVR8_RHILV
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJC68574.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
FAD dependent oxidoreductase
SCNpilot_cont_500_bf_scaffold_2303_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9647..10546
DNA (900bp) protein (300aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JLB4_AGRRK rbh
transcriptional regulator protein rbh
Transcriptional regulator protein {ECO:0000313|EMBL:ACM28613.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_2303_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10613..10849
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TWW0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN84914.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2303_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10908..11408)
DNA (501bp) protein (167aa)
GCN5-related N-acetyltransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAC4_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CCV13380.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
N-acetyltransferase GCN5
SCNpilot_cont_500_bf_scaffold_2303_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11431..12243)
DNA (813bp) protein (271aa)
Transcriptional regulator of sugar metabolism n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRF0_9RHIZ rbh
Transcriptional regulator of sugar metabolism {ECO:0000313|EMBL:EYR78656.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
deoR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2303_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12414..12887)
DNA (474bp) protein (158aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VF31_9RHIZ
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_500_bf_scaffold_2303_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12902..13513)
DNA (612bp) protein (204aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VF31_9RHIZ
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_500_bf_scaffold_2303_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13452..14147)
DNA (696bp) protein (232aa)
Two-component transcriptional regulator n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVC0_RHITR
two-component transcriptional regulator
Two-component transcriptional regulator {ECO:0000313|EMBL:AGB74089.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 15 items

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