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SCNpilot_cont_500_bf_scaffold_2567

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2567_1
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..199)
DNA (198bp) protein (66aa)
septum site-determining protein MinD n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000382CF43
minD; putative septum site-determining protein minD; K03609 septum site-determining protein MinD
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_cont_500_bf_scaffold_2567_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233..988)
DNA (756bp) protein (252aa)
Probable septum site-determining protein MinC n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYE2_RHITR
minC; septum site-determining protein MinC
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_2567_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1300..1791)
DNA (492bp) protein (164aa)
MutT/NUDIX family NTP pyrophosphohydrolase {ECO:0000313|EMBL:CCE98261.1}; EC=3.6.1.22 {ECO:0000313|EMBL:CCE98261.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
MutT/NUDIX family NTP pyrophosphohydrolase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A5E0_RHIFH
MutT/NUDIX family NTP pyrophosphohydrolase
SCNpilot_cont_500_bf_scaffold_2567_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1917..2465)
DNA (549bp) protein (183aa)
HTH-type transcriptional regulator PuuR n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XEL1_RHIFR rbh
puuR; HTH-type transcriptional regulator PuuR rbh
HTH-type transcriptional regulator PuuR {ECO:0000313|EMBL:AFL54317.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_500_bf_scaffold_2567_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2571..3896
DNA (1326bp) protein (442aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Aminotransferase class-III n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B6A0D8_RHILW
Aminotransferase class-III {ECO:0000313|EMBL:ACI58072.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_500_bf_scaffold_2567_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3948..4412)
DNA (465bp) protein (155aa)
Putative HTH-type transcriptional regulator y4sM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX25_9RHIZ
Putative HTH-type transcriptional regulator y4sM {ECO:0000313|EMBL:EYR82556.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative HTH-type transcriptional regulator y4sM
SCNpilot_cont_500_bf_scaffold_2567_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4537..5670
DNA (1134bp) protein (378aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
dadX; Alanine racemase, catabolic (EC:5.1.1.1) rbh
Alanine racemase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3N0_RHIML rbh
SCNpilot_cont_500_bf_scaffold_2567_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5736..6986
DNA (1251bp) protein (417aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
dadA3; D-amino acid dehydrogenase small subunit DadA (EC:1.4.99.1) rbh
D-amino acid dehydrogenase small subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1Y1_9RHIZ
SCNpilot_cont_500_bf_scaffold_2567_9
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7056..7487)
DNA (432bp) protein (144aa)
Organic hydroperoxide resistance protein n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AJS9_BURGB
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:KER67896.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
Organic hydroperoxide resistance protein
SCNpilot_cont_500_bf_scaffold_2567_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7704..8183
DNA (480bp) protein (160aa)
general stress protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000372EAE1
pyridoxamine 5'-phosphate oxidase-related FMN-binding
Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ACS61088.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_500_bf_scaffold_2567_11
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8197..9054
DNA (858bp) protein (286aa)
short-chain dehydrogenase/reductase SDR; K00540 [EC:1.-.-.-] rbh
oxidoreductase n=1 Tax=Rhizobium mongolense RepID=UPI0003B5E12E rbh
Short-chain dehydrogenase protein {ECO:0000313|EMBL:AJD45343.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_cont_500_bf_scaffold_2567_12
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9087..10109)
DNA (1023bp) protein (341aa)
UPI0003CEE52F related cluster n=1 Tax=unknown RepID=UPI0003CEE52F
Iditol 2-dehydrogenase {ECO:0000313|EMBL:ESY83650.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
alcohol dehydrogenase GroES domain-containing protein
SCNpilot_cont_500_bf_scaffold_2567_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10185..11273)
DNA (1089bp) protein (363aa)
yurJ1; ABC transporter ATP-binding protein YurJ (EC:3.6.3.-) rbh
Putative ABC transporter ATP-binding protein YurJ n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X141_RHIFR rbh
Sugar ABC transporter ATPase {ECO:0000313|EMBL:KDP72832.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_2567_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11368..12816)
DNA (1449bp) protein (483aa)
Probable ABC transporter, periplasmic substrate-binding protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGP2_RHIFH rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP72831.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC transporter periplasmic substrate-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_2567_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12854..13882)
DNA (1029bp) protein (343aa)
Putative ABC transporter, permease protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGP3_RHIFH rbh
ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
Putative ABC transporter, permease protein {ECO:0000313|EMBL:CCF00225.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_500_bf_scaffold_2567_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13879..14754)
DNA (876bp) protein (292aa)
ABC transporter, permease protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KRN4_RHISN rbh
ABC transporter permease {ECO:0000313|EMBL:KDP72829.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC transporter permease; K02025 multiple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_2567_17
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15130..15582)
DNA (453bp) protein (151aa)
rbsK2; ribokinase RbsK (EC:2.7.1.15)
Ribokinase RbsK {ECO:0000313|EMBL:AFL49593.1}; EC=2.7.1.15 {ECO:0000313|EMBL:AFL49593.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Ribokinase RbsK n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X137_RHIFR
SCNpilot_cont_500_bf_scaffold_2567_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15654..15962)
DNA (309bp) protein (103aa)
putative ribokinase; K00852 ribokinase [EC:2.7.1.15]
Putative ribokinase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGP5_RHIFH
Ribokinase {ECO:0000313|EMBL:KDP72828.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_2567_19
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16004..16453)
DNA (450bp) protein (150aa)
putative fucose dissimilation pathway protein,RbsD_FucU superfamily; K02431 L-fucose mutarotase [EC:5.1.3.-]
Putative fucose dissimilation pathway protein,RbsD_FucU superfamily n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGP6_RHIFH
Fucose mutarotase {ECO:0000313|EMBL:KEC79183.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_cont_500_bf_scaffold_2567_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16541..17710)
DNA (1170bp) protein (390aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde Dehydrogenase n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6E8U3_SINMK
Aldehyde dehydrogenase {ECO:0000313|EMBL:KDP72826.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_2567_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17773..18852)
DNA (1080bp) protein (360aa)
dhaS1; aldehyde dehydrogenase DhaS (EC:1.2.1.3)
Putative aldehyde dehydrogenase DhaS n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X135_RHIFR
Aldehyde dehydrogenase {ECO:0000313|EMBL:AHK45617.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_cont_500_bf_scaffold_2567_22
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18858..19877)
DNA (1020bp) protein (340aa)
deoxyribose-phosphate aldolase (EC:4.1.2.4) rbh
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202, ECO:0000313|EMBL:CAC49204.1};; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
deoxyribose-phosphate aldolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000363599C rbh
SCNpilot_cont_500_bf_scaffold_2567_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19984..20709)
DNA (726bp) protein (242aa)
Putative transcriptional regulator, DeoR family n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGP9_RHIFH rbh
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:AHK45615.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
DeoR family transcriptional regulator; K11534 DeoR family transcriptional regulator, deoxyribose operon repressor rbh
SCNpilot_cont_500_bf_scaffold_2567_24
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20798..22300)
DNA (1503bp) protein (501aa)
putative carbohydrate kinase; K00854 xylulokinase [EC:2.7.1.17] rbh
Putative carbohydrate kinase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IZC7_9RHIZ rbh
Putative carbohydrate kinase {ECO:0000313|EMBL:EMG52036.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
SCNpilot_cont_500_bf_scaffold_2567_25
bacterium YEK0313, Bacteria

Not on your lists

22624..22983
DNA (360bp) protein (120aa)
Chain length determinant protein {ECO:0000313|EMBL:CEJ14425.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Displaying 25 items

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