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SCNpilot_cont_500_bf_scaffold_2867

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2867_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..339
DNA (339bp) protein (113aa)
mepA; Murein endopeptidase; K07261 penicillin-insensitive murein endopeptidase [EC:3.4.24.-]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036026CF
Peptidase {ECO:0000313|EMBL:KDP70845.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_2867_2
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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420..863
DNA (444bp) protein (148aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
mgsA; methylglyoxal synthase (EC:4.2.3.3); K01734 methylglyoxal synthase [EC:4.2.3.3]
Methylglyoxal synthase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U3X5_RHIRD
SCNpilot_cont_500_bf_scaffold_2867_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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865..1908
DNA (1044bp) protein (348aa)
Glucokinase {ECO:0000256|HAMAP-Rule:MF_00524}; EC=2.7.1.2 {ECO:0000256|HAMAP-Rule:MF_00524};; Glucose kinase {ECO:0000256|HAMAP-Rule:MF_00524}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
glk; glucokinase (EC:2.7.1.2)
glucokinase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003759B1A
SCNpilot_cont_500_bf_scaffold_2867_4
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1979..3835
DNA (1857bp) protein (619aa)
Uncharacterized ABC transporter ATP-binding protein y4gM n=1 Tax=Rhizobium sp. RepID=L0NL61_RHISP rbh
Uncharacterized ABC transporter ATP-binding protein y4gM {ECO:0000313|EMBL:CCF21805.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
lipid A transporter permease/ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2867_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3838..4659
DNA (822bp) protein (274aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] rbh
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MMY3_RHIL3 rbh
SCNpilot_cont_500_bf_scaffold_2867_6
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4674..5309
DNA (636bp) protein (212aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobia
phosphoglyceromutase n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000374723E rbh
phosphoglyceromutase rbh
SCNpilot_cont_500_bf_scaffold_2867_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5383..7389)
DNA (2007bp) protein (669aa)
Trimethylamine dehydrogenase {ECO:0000313|EMBL:CDX32839.1}; EC=1.5.8.2 {ECO:0000313|EMBL:CDX32839.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Trimethylamine dehydrogenase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDF8_9RHIZ rbh
NADH:flavin oxidoreductase/NADH oxidase rbh
SCNpilot_cont_500_bf_scaffold_2867_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8162..8701
DNA (540bp) protein (180aa)
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279026};; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00279018};; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Acetylornithine deacetylase (ArgE) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDH8_9RHIZ
acetylornithine deacetylase ArgE
SCNpilot_cont_500_bf_scaffold_2867_9
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8698..9633)
DNA (936bp) protein (312aa)
UPI0003CFA4BA related cluster n=1 Tax=unknown RepID=UPI0003CFA4BA
LysR family transcriptional regulator {ECO:0000313|EMBL:ESZ28568.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2867_10
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9665..11176)
DNA (1512bp) protein (504aa)
aldehyde dehydrogenase; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-] rbh
PREDICTED: aldehyde dehydrogenase family 2 member B4, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12176 rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ESY71633.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_cont_500_bf_scaffold_2867_11
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11199..11873)
DNA (675bp) protein (225aa)
UPI0003D01626 related cluster n=1 Tax=unknown RepID=UPI0003D01626 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ28570.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2867_12
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11880..12293)
DNA (414bp) protein (138aa)
UPI0003D02D51 related cluster n=1 Tax=unknown RepID=UPI0003D02D51
endoribonuclease L-PSP
Endoribonuclease {ECO:0000313|EMBL:ESZ28571.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_cont_500_bf_scaffold_2867_13
unknown

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comp(12303..12401)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2867_14
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12429..13961)
DNA (1533bp) protein (511aa)
Vinylacetyl-CoA delta-isomerase (EC:5.3.3.3); K00483 4-hydroxyphenylacetate-3-monooxygenase large chain [EC:1.14.14.9] rbh
Probable 4-hydroxyphenylacetic hydroxylase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSP7_9PROT rbh
Probable 4-hydroxyphenylacetic hydroxylase {ECO:0000313|EMBL:EDP64301.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_cont_500_bf_scaffold_2867_15
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14129..15262)
DNA (1134bp) protein (378aa)
ABC-type branched-chain amino acid transport systems, periplasmic component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z1M6_PARAH
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KGJ10610.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC-type branched-chain amino acid transport systems, periplasmic component
SCNpilot_cont_500_bf_scaffold_2867_16
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15529..16446
DNA (918bp) protein (306aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y1H9_PARAH
ABC transporter permease {ECO:0000313|EMBL:KGJ10611.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
branched-chain amino acid ABC-type transport system, permease component
SCNpilot_cont_500_bf_scaffold_2867_17
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16450..17640
DNA (1191bp) protein (397aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YIP6_PARAH
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KGJ10612.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
branched-chain amino acid ABC-type transport system, permease component
SCNpilot_cont_500_bf_scaffold_2867_18
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17637..18428
DNA (792bp) protein (264aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XV03_PARAH
ABC-type branched-chain amino acid transport systems, ATPase component
ABC-type branched-chain amino acid transport systems, ATPase component {ECO:0000313|EMBL:AGT11349.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_cont_500_bf_scaffold_2867_19
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18421..19122
DNA (702bp) protein (234aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y6Z9_PARAH
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ10614.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC-type branched-chain amino acid transport systems, ATPase component
SCNpilot_cont_500_bf_scaffold_2867_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19241..20137
DNA (897bp) protein (299aa)
aspA; aspartate ammonia-lyase; K01744 aspartate ammonia-lyase [EC:4.3.1.1]
Fumarate lyase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A0Q2_RHILW
Fumarate lyase {ECO:0000313|EMBL:ACI58186.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Displaying 20 items

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