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SCNpilot_cont_500_bf_scaffold_2998

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2998_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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184..516
DNA (333bp) protein (111aa)
Transcriptional regulator, ArsR family n=4 Tax=Rhizobium meliloti RepID=F6DZT4_SINMK
hypothetical protein
ArsR family transcriptional regulator {ECO:0000313|EMBL:EHK77173.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_cont_500_bf_scaffold_2998_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

546..1658
DNA (1113bp) protein (371aa)
nerA; putative glycerol trinitrate (GTN) reductase protein; K10680 N-ethylmaleimide reductase [EC:1.-.-.-]
NADH:flavin oxidoreductase, Old Yellow Enzyme family n=4 Tax=Rhizobium meliloti RepID=M4IEY4_RHIML
Putative glycerol trinitrate (GTN) reductase protein {ECO:0000313|EMBL:AEH79264.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_cont_500_bf_scaffold_2998_3
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1779..2801)
DNA (1023bp) protein (341aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhizobium sp. CF080 RepID=J2K7E7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM58538.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_500_bf_scaffold_2998_4
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2893..3786
DNA (894bp) protein (298aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2KWA6_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDN54816.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
transcriptional regulator, LysR family
SCNpilot_cont_500_bf_scaffold_2998_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3787..4071)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VV23_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC77196.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2998_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4476..5567
DNA (1092bp) protein (364aa)
Ca2+/H+ antiporter n=1 Tax=Rhizobium sp. CF142 RepID=J2KXG6_9RHIZ
Ca2+/H+ antiporter {ECO:0000313|EMBL:EJJ25897.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
transmembrane cation transporter; K07300 Ca2+:H+ antiporter
SCNpilot_cont_500_bf_scaffold_2998_7
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5629..6555)
DNA (927bp) protein (309aa)
Aspartate aminotransferase {ECO:0000313|EMBL:CCM76647.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CCM76647.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
aatA; aspartate aminotransferase A (EC:2.6.1.1)
Aspartate aminotransferase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYZ4_9RHIZ
SCNpilot_cont_500_bf_scaffold_2998_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7627..7842
DNA (216bp) protein (72aa)
Cold shock protein n=9 Tax=Rhizobium/Agrobacterium group RepID=A9CI66_AGRT5
cspA; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold shock protein {ECO:0000313|EMBL:CDN92466.1}; Cold shock-like protein cspG CPS-G {ECO:0000313|EMBL:KJX87795.1}; Cold-shock protein {ECO:0000313|EMBL:KAJ34720.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_500_bf_scaffold_2998_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7987..8409
DNA (423bp) protein (141aa)
BA14K family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKX9_RHITR
BA14K family protein
BA14K family protein {ECO:0000313|EMBL:AGB71897.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_2998_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8469..9116)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTV0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79034.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ycbL; hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2998_11
unknown

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comp(9183..9359)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2998_12
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9586..10065
DNA (480bp) protein (160aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TAC8_9RHIZ
MarR family transcriptional regulator {ECO:0000313|EMBL:EJT04382.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2998_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10099..10806
DNA (708bp) protein (236aa)
Putative two-component response regulator transcriptional regulatory protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VA11_9RHIZ
Putative two-component response regulator transcriptional regulatory protein {ECO:0000313|EMBL:ENN87902.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
two-component response regulator
SCNpilot_cont_500_bf_scaffold_2998_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10817..12193
DNA (1377bp) protein (459aa)
two-component sensor histidine kinase (EC:2.7.13.3); K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Probable two-component sensor histidine kinase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PUY9_RHIE6
SCNpilot_cont_500_bf_scaffold_2998_15
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12212..12607
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Burkholderia thailandensis RepID=I6ACV4_BURTH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJY39373.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
SCNpilot_cont_500_bf_scaffold_2998_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12610..13404)
DNA (795bp) protein (265aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
HAD-superfamily hydrolase, subfamily IIB (EC:3.1.3.12); K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
Putative trehalose-phosphate phosphatase OtsB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EP05_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_2998_17
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13541..14665
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UFP9_SINMW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABR62479.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_2998_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14851..15432
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JI14_9RHIZ
PF07081 family protein {ECO:0000313|EMBL:CDN54833.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein; K09702 hypothetical protein
SCNpilot_cont_500_bf_scaffold_2998_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15449..15790)
DNA (342bp) protein (114aa)
tRNA-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036CC9C7
export-like chaperone CsaA; K06878 tRNA-binding protein
Export-related chaperone CsaA {ECO:0000313|EMBL:ACI56024.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_500_bf_scaffold_2998_20
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15814..16635)
DNA (822bp) protein (274aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
pyrroline-5-carboxylate reductase; K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2] rbh
Pyrroline-5-carboxylate reductase n=1 Tax=Rhizobium sp. CF142 RepID=J2KXI7_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_2998_21
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16638..17138)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Rhizobium radiobacter RepID=F7U7U6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KGE01076.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2998_22
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17521..17781)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UCN1_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENN87908.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_500_bf_scaffold_2998_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17980..18783
DNA (804bp) protein (268aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-); K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
Prolipoprotein diacylglyceryl transferase n=2 Tax=Agrobacterium RepID=F0L8H6_AGRSH
SCNpilot_cont_500_bf_scaffold_2998_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18802..19908
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AIZ1_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE55583.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2998_25
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20026..20826
DNA (801bp) protein (267aa)
Uncharacterized protein, YfiH family n=1 Tax=Rhizobium sp. AP16 RepID=J2W9T8_9RHIZ
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein; K05810 conserved hypothetical protein
SCNpilot_cont_500_bf_scaffold_2998_26
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20828..21313
DNA (486bp) protein (162aa)
Xaa-Pro dipeptidase; K01271 Xaa-Pro dipeptidase [EC:3.4.13.9]
Xaa-Pro aminopeptidase n=1 Tax=Rhizobium sp. CF122 RepID=J3BSI6_9RHIZ
Xaa-Pro dipeptidase {ECO:0000313|EMBL:KGE01082.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Displaying 26 items

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